View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18669_low_13 (Length: 339)
Name: NF18669_low_13
Description: NF18669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18669_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 29908769 - 29909010
Alignment:
| Q |
1 |
tacaaccttgagcaaaaggacaaatgacaaaatcaaaagctaaaaccagggaagtttaaataaaaacaccaaccttctcatcaaccaacaccatctcaac |
100 |
Q |
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| T |
29908769 |
tacaaccttgaacaaaaggacaaatgacaaaaacaaaagctaaaaccagggcagtttaaataaaaacaccaaccttctcatcaaccaacaccatctcaac |
29908868 |
T |
|
| Q |
101 |
cgaattcacctgttcaggatgaagaaacgcaggaacctcccacagatgcaccacacgaacaatgaatctccaagactcctttccaggagcaacatcagat |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
29908869 |
cgaattcacctgttcaggatgaagaaacgcaggagcctcccacagacgcaccacacgaacaatgaatctccaagactcctttccaggagcagcatcagat |
29908968 |
T |
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| Q |
201 |
aacatataaaaactgctatcagcaccagcacgggtctgcaga |
242 |
Q |
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|||| || |||||||||||||||||||||||||||||||||| |
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| T |
29908969 |
aacagatcaaaactgctatcagcaccagcacgggtctgcaga |
29909010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 243 - 314
Target Start/End: Original strand, 29909100 - 29909171
Alignment:
| Q |
243 |
atgagtgtgaaaacacaaaaacaaaccagcccaatttatagaacaacagagcacaagcagccaaaacggttt |
314 |
Q |
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| T |
29909100 |
atgagtgtgaaaacacaaaaacaaactagcccaatttatagaacaacagagcacaagcagccaaaacggttt |
29909171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 199
Target Start/End: Original strand, 29908023 - 29908151
Alignment:
| Q |
71 |
aaccttctcatcaaccaacaccatctcaaccgaattcacctgttcaggatgaagaaacgcaggaacctcccacagatgcaccacacgaacaatgaatctc |
170 |
Q |
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||||||||||||||| ||||||||||||| ||||| | ||||| | |||||||| || | |||||||||| | | || ||||||| |||||||| |
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| T |
29908023 |
aaccttctcatcaacaaacaccatctcaattgaattgatctgttatgattgaagaaaatcacgcacctcccacaaacgaacaacacgaagcttgaatctc |
29908122 |
T |
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| Q |
171 |
caagactcctttccaggagcaacatcaga |
199 |
Q |
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| T |
29908123 |
caagactctcttccaggaagaacatcaga |
29908151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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