View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18669_low_14 (Length: 325)

Name: NF18669_low_14
Description: NF18669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18669_low_14
NF18669_low_14
[»] chr3 (21 HSPs)
chr3 (1-309)||(24459827-24460139)
chr3 (6-205)||(24477997-24478196)
chr3 (164-198)||(8051214-8051248)
chr3 (164-198)||(10499151-10499185)
chr3 (164-212)||(27093389-27093437)
chr3 (164-207)||(3054994-3055037)
chr3 (163-198)||(16354934-16354969)
chr3 (160-207)||(25925529-25925576)
chr3 (164-207)||(26871537-26871580)
chr3 (164-215)||(47079701-47079752)
chr3 (164-198)||(1360921-1360955)
chr3 (164-198)||(9832497-9832531)
chr3 (164-198)||(16991542-16991576)
chr3 (164-198)||(26988996-26989030)
chr3 (164-198)||(27923085-27923119)
chr3 (164-198)||(31520647-31520681)
chr3 (164-198)||(36720381-36720415)
chr3 (166-212)||(42799775-42799821)
chr3 (164-197)||(5499450-5499483)
chr3 (164-196)||(2597264-2597296)
chr3 (164-196)||(47810788-47810820)
[»] chr4 (9 HSPs)
chr4 (164-212)||(19238605-19238653)
chr4 (163-198)||(55427242-55427277)
chr4 (164-198)||(9241067-9241101)
chr4 (164-198)||(51250564-51250598)
chr4 (164-212)||(29195095-29195143)
chr4 (164-198)||(27965552-27965586)
chr4 (164-198)||(37109393-37109427)
chr4 (164-198)||(37720256-37720290)
chr4 (164-197)||(46545711-46545744)
[»] chr7 (23 HSPs)
chr7 (164-203)||(41487362-41487401)
chr7 (163-212)||(23301630-23301679)
chr7 (164-197)||(30579335-30579368)
chr7 (164-212)||(43590907-43590955)
chr7 (164-212)||(45559200-45559248)
chr7 (164-207)||(6426085-6426128)
chr7 (163-198)||(31835191-31835226)
chr7 (164-198)||(5273632-5273666)
chr7 (164-198)||(19553454-19553488)
chr7 (164-198)||(25021377-25021411)
chr7 (164-198)||(26459452-26459486)
chr7 (164-198)||(35328916-35328950)
chr7 (164-198)||(39499761-39499795)
chr7 (164-198)||(39631844-39631878)
chr7 (164-198)||(42836043-42836077)
chr7 (163-197)||(48039690-48039724)
chr7 (164-198)||(48771938-48771972)
chr7 (164-197)||(24513797-24513830)
chr7 (164-212)||(2446308-2446356)
chr7 (164-212)||(5579262-5579310)
chr7 (164-212)||(11720988-11721036)
chr7 (164-212)||(25956320-25956368)
chr7 (164-212)||(48125202-48125250)
[»] chr1 (13 HSPs)
chr1 (163-198)||(19528369-19528404)
chr1 (164-197)||(40257399-40257432)
chr1 (164-212)||(15581169-15581217)
chr1 (164-212)||(31794292-31794340)
chr1 (164-212)||(52116809-52116857)
chr1 (164-198)||(9165237-9165271)
chr1 (163-197)||(21694445-21694479)
chr1 (164-198)||(36371470-36371504)
chr1 (163-215)||(16170003-16170055)
chr1 (163-195)||(24857875-24857907)
chr1 (166-198)||(33700815-33700847)
chr1 (164-212)||(37046985-37047033)
chr1 (164-196)||(37310020-37310052)
[»] chr5 (9 HSPs)
chr5 (164-198)||(21589288-21589322)
chr5 (164-212)||(16457810-16457858)
chr5 (162-198)||(21549179-21549215)
chr5 (164-212)||(25627057-25627105)
chr5 (164-198)||(7918511-7918545)
chr5 (157-203)||(26078088-26078134)
chr5 (164-214)||(32670653-32670703)
chr5 (164-197)||(30109351-30109384)
chr5 (164-212)||(8278303-8278351)
[»] chr2 (13 HSPs)
chr2 (164-198)||(37480075-37480109)
chr2 (164-212)||(7799063-7799111)
chr2 (164-212)||(23052551-23052599)
chr2 (165-212)||(37755999-37756046)
chr2 (164-198)||(42327437-42327471)
chr2 (164-198)||(42602554-42602588)
chr2 (164-198)||(42922414-42922448)
chr2 (164-197)||(342395-342428)
chr2 (164-212)||(1729816-1729864)
chr2 (164-212)||(11062360-11062408)
chr2 (164-212)||(16525178-16525226)
chr2 (164-212)||(29197404-29197452)
chr2 (164-212)||(32106566-32106614)
[»] chr8 (21 HSPs)
chr8 (159-212)||(6436583-6436636)
chr8 (163-212)||(26688864-26688913)
chr8 (163-212)||(29431010-29431059)
chr8 (164-212)||(5264544-5264592)
chr8 (164-212)||(22268961-22269009)
chr8 (164-198)||(968362-968396)
chr8 (164-198)||(6530807-6530841)
chr8 (164-198)||(8484999-8485033)
chr8 (164-198)||(16852340-16852374)
chr8 (164-198)||(18540298-18540332)
chr8 (164-198)||(19703529-19703563)
chr8 (164-198)||(23874424-23874458)
chr8 (164-197)||(3826820-3826853)
chr8 (164-197)||(28783060-28783093)
chr8 (165-198)||(29858091-29858124)
chr8 (166-198)||(2203494-2203526)
chr8 (166-198)||(3624582-3624614)
chr8 (167-215)||(36042984-36043032)
chr8 (164-196)||(40591732-40591764)
chr8 (164-212)||(44780142-44780190)
chr8 (164-196)||(45527568-45527600)
[»] chr6 (6 HSPs)
chr6 (164-212)||(21418470-21418518)
chr6 (168-198)||(6776649-6776679)
chr6 (164-198)||(12188345-12188379)
chr6 (164-198)||(30127400-30127434)
chr6 (164-198)||(33549104-33549138)
chr6 (166-198)||(32613182-32613214)
[»] scaffold0258 (1 HSPs)
scaffold0258 (163-198)||(15365-15400)
[»] scaffold0172 (1 HSPs)
scaffold0172 (164-195)||(32814-32845)
[»] scaffold0032 (1 HSPs)
scaffold0032 (163-198)||(112281-112316)
[»] scaffold0118 (1 HSPs)
scaffold0118 (164-197)||(41676-41709)
[»] scaffold0211 (1 HSPs)
scaffold0211 (160-212)||(24049-24101)
[»] scaffold0101 (1 HSPs)
scaffold0101 (171-215)||(43357-43401)


Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 24459827 - 24460139
Alignment:
Q  1 agtgcaattgtttatacacaatatatgatgtgatattacagacacaattaaaccctgacaacactctcaagcattatgtgttttgatttgattactcaaa 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24459827 agtgtaattgtttatacacaatatatgatgtgatattacagacacaattaaaccctgacaacactctcaagcattatgtgttttgatttgattactcaaa 24459926  T
Q  101 gaaaataatcgcttttctttgacaggtaccagagggaagttttgataacaaaaactataaagcaacccacttgggttggcctggtggtattggcttggta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24459927 gaaaataatcgcttttctttgacaggtaccagagggaagttttgataacaaaaactataaagcaacccacttgggttggcctggtggtattggcttggta 24460026  T
Q  201 ctttggaatgtgttctcaggttccattcctcccagtaacaatttcggtgggctag----tacagagaaaagctctagctttaaatgggcccccacatgtg 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||    ||||||| |||||||||||||||||||||||||||||||||    
T  24460027 ctttggaatgtgttctcaggttccattcctcccagtaacaatttcggtgggcaagtacatacagagcaaagctctagctttaaatgggcccccacatgtg 24460126  T
Q  297 gacggtgagattg 309  Q
    |||||||| ||||    
T  24460127 gacggtgatattg 24460139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 6 - 205
Target Start/End: Original strand, 24477997 - 24478196
Alignment:
Q  6 aattgtttatacacaatatatgatgtgatattacagacacaattaaaccctgacaacactctcaagcattatgtgttttgatttgattactcaaagaaaa 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||    
T  24477997 aattgtttatacacaatatatgatgtgatattacagacacaattaaaccctgacaacactctcaagaattatgtgttttgatttgcttaatcaaagaaaa 24478096  T
Q  106 taatcgcttttctttgacaggtaccagagggaagttttgataacaaaaactataaagcaacccacttgggttggcctggtggtattggcttggtactttg 205  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||  ||||||||||||||||||||||||    
T  24478097 taatcgcttttctttgacaggtaccagagggaagttttgataacgaaaactatacagcaacccacttgggttggtttggtggtattggcttggtactttg 24478196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 198
Target Start/End: Original strand, 8051214 - 8051248
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttgg 198  Q
    |||||||||||||||||||||||||||||||||||    
T  8051214 aacccacttgggttggcctggtggtattggcttgg 8051248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 198
Target Start/End: Complemental strand, 10499185 - 10499151
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttgg 198  Q
    |||||||||||||||||||||||||||||||||||    
T  10499185 aacccacttgggttggcctggtggtattggcttgg 10499151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 27093437 - 27093389
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttggtactttggaatgtg 212  Q
    ||||||||||||||||||| ||||||||||||||| |||| ||| ||||    
T  27093437 aacccacttgggttggcctagtggtattggcttggaacttgggagtgtg 27093389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 164 - 207
Target Start/End: Original strand, 3054994 - 3055037
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttggtactttgga 207  Q
    ||||||||||||||||||||||||| ||||||||| || |||||    
T  3054994 aacccacttgggttggcctggtggtgttggcttgggaccttgga 3055037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 163 - 198
Target Start/End: Complemental strand, 16354969 - 16354934
Alignment:
Q  163 caacccacttgggttggcctggtggtattggcttgg 198  Q
    |||||||||||||||||||| |||||||||||||||    
T  16354969 caacccacttgggttggcctagtggtattggcttgg 16354934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 160 - 207
Target Start/End: Original strand, 25925529 - 25925576
Alignment:
Q  160 aagcaacccacttgggttggcctggtggtattggcttggtactttgga 207  Q
    |||||||||||||| |||||| ||||||| ||||||||| ||||||||    
T  25925529 aagcaacccacttgagttggcatggtggtgttggcttgggactttgga 25925576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 164 - 207
Target Start/End: Complemental strand, 26871580 - 26871537
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttggtactttgga 207  Q
    ||||||||||||||||||||||||| ||||||||| || |||||    
T  26871580 aacccacttgggttggcctggtggtgttggcttgggaccttgga 26871537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 164 - 215
Target Start/End: Original strand, 47079701 - 47079752
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttggtactttggaatgtgttc 215  Q
    |||||||||||||||| |||||||| ||||||||| |  |||||||||||||    
T  47079701 aacccacttgggttggtctggtggtgttggcttgggatcttggaatgtgttc 47079752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 198
Target Start/End: Original strand, 1360921 - 1360955
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttgg 198  Q
    ||||||||||||||||||||||| |||||||||||    
T  1360921 aacccacttgggttggcctggtgttattggcttgg 1360955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 198
Target Start/End: Original strand, 9832497 - 9832531
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttgg 198  Q
    |||||||||||||||||| ||||||||||||||||    
T  9832497 aacccacttgggttggcccggtggtattggcttgg 9832531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 198
Target Start/End: Original strand, 16991542 - 16991576
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttgg 198  Q
    |||||| ||||||||||||||||||||||||||||    
T  16991542 aacccatttgggttggcctggtggtattggcttgg 16991576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 198
Target Start/End: Original strand, 26988996 - 26989030
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttgg 198  Q
    ||||||||||||||||||| |||||||||||||||    
T  26988996 aacccacttgggttggcctagtggtattggcttgg 26989030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 198
Target Start/End: Complemental strand, 27923119 - 27923085
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttgg 198  Q
    ||||||||| |||||||||||||||||||||||||    
T  27923119 aacccacttaggttggcctggtggtattggcttgg 27923085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 198
Target Start/End: Complemental strand, 31520681 - 31520647
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttgg 198  Q
    |||||||||||||||||||||||| ||||||||||    
T  31520681 aacccacttgggttggcctggtggcattggcttgg 31520647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 198
Target Start/End: Original strand, 36720381 - 36720415
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttgg 198  Q
    |||||||||||||||| ||||||||||||||||||    
T  36720381 aacccacttgggttggtctggtggtattggcttgg 36720415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 212
Target Start/End: Complemental strand, 42799821 - 42799775
Alignment:
Q  166 cccacttgggttggcctggtggtattggcttggtactttggaatgtg 212  Q
    ||||||||||||||||||||||| ||||||||| || ||||| ||||    
T  42799821 cccacttgggttggcctggtggtgttggcttgggaccttggagtgtg 42799775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 197
Target Start/End: Complemental strand, 5499483 - 5499450
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttg 197  Q
    ||||||||||||||||||||||||||||| ||||    
T  5499483 aacccacttgggttggcctggtggtattgacttg 5499450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 196
Target Start/End: Complemental strand, 2597296 - 2597264
Alignment:
Q  164 aacccacttgggttggcctggtggtattggctt 196  Q
    |||||||||||||||| ||||||||||||||||    
T  2597296 aacccacttgggttggtctggtggtattggctt 2597264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 196
Target Start/End: Complemental strand, 47810820 - 47810788
Alignment:
Q  164 aacccacttgggttggcctggtggtattggctt 196  Q
    |||||||||||||||| ||||||||||||||||    
T  47810820 aacccacttgggttggtctggtggtattggctt 47810788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 19238653 - 19238605
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttggtactttggaatgtg 212  Q
    ||||||||||||||||||||||||||||||||||| |||| ||| ||||    
T  19238653 aacccacttgggttggcctggtggtattggcttgggacttgggagtgtg 19238605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 163 - 198
Target Start/End: Complemental strand, 55427277 - 55427242
Alignment:
Q  163 caacccacttgggttggcctggtggtattggcttgg 198  Q
    ||||||||||||||||||||||||||||||||||||    
T  55427277 caacccacttgggttggcctggtggtattggcttgg 55427242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 198
Target Start/End: Complemental strand, 9241101 - 9241067
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttgg 198  Q
    |||||||||||||||||||||||||||||||||||    
T  9241101 aacccacttgggttggcctggtggtattggcttgg 9241067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 198
Target Start/End: Complemental strand, 51250598 - 51250564
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttgg 198  Q
    |||||||||||||||||||||||||||||||||||    
T  51250598 aacccacttgggttggcctggtggtattggcttgg 51250564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 29195095 - 29195143
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttggtactttggaatgtg 212  Q
    ||||||||||||||||||||||||| ||||||||| || ||||| ||||    
T  29195095 aacccacttgggttggcctggtggtgttggcttgggaccttggagtgtg 29195143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 198
Target Start/End: Complemental strand, 27965586 - 27965552
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttgg 198  Q
    ||||||||||||||||||| |||||||||||||||    
T  27965586 aacccacttgggttggcctagtggtattggcttgg 27965552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 198
Target Start/End: Complemental strand, 37109427 - 37109393
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttgg 198  Q
    ||||||||||||||||||| |||||||||||||||    
T  37109427 aacccacttgggttggcctagtggtattggcttgg 37109393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 198
Target Start/End: Complemental strand, 37720290 - 37720256
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttgg 198  Q
    ||||||||||||||||||||||| |||||||||||    
T  37720290 aacccacttgggttggcctggtgttattggcttgg 37720256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 197
Target Start/End: Original strand, 46545711 - 46545744
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttg 197  Q
    ||||||||||||||||||| ||||||||||||||    
T  46545711 aacccacttgggttggcctagtggtattggcttg 46545744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 203
Target Start/End: Original strand, 41487362 - 41487401
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttggtactt 203  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  41487362 aacccacttgggttggcctggtggtattggcttgggactt 41487401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 163 - 212
Target Start/End: Complemental strand, 23301679 - 23301630
Alignment:
Q  163 caacccacttgggttggcctggtggtattggcttggtactttggaatgtg 212  Q
    |||||||||||||||||||||||||||||| ||||| |||| ||| ||||    
T  23301679 caacccacttgggttggcctggtggtattgacttgggacttgggagtgtg 23301630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 197
Target Start/End: Original strand, 30579335 - 30579368
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttg 197  Q
    ||||||||||||||||||||||||||||||||||    
T  30579335 aacccacttgggttggcctggtggtattggcttg 30579368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 43590907 - 43590955
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttggtactttggaatgtg 212  Q
    |||||| |||||||||||||||||||||||||||| |||| ||| ||||    
T  43590907 aacccagttgggttggcctggtggtattggcttgggacttgggagtgtg 43590955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 45559200 - 45559248
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttggtactttggaatgtg 212  Q
    ||||||||||||||||||| ||||||||||||||| || ||||| ||||    
T  45559200 aacccacttgggttggcctagtggtattggcttggaaccttggagtgtg 45559248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 164 - 207
Target Start/End: Complemental strand, 6426128 - 6426085
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttggtactttgga 207  Q
    ||||||||||||||||||||||||| |||||||||  |||||||    
T  6426128 aacccacttgggttggcctggtggtgttggcttgggtctttgga 6426085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 163 - 198
Target Start/End: Original strand, 31835191 - 31835226
Alignment:
Q  163 caacccacttgggttggcctggtggtattggcttgg 198  Q
    |||||||||||||||||||||||||| |||||||||    
T  31835191 caacccacttgggttggcctggtggtgttggcttgg 31835226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 198
Target Start/End: Complemental strand, 5273666 - 5273632
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttgg 198  Q
    ||||||||||||||||||||||||| |||||||||    
T  5273666 aacccacttgggttggcctggtggtgttggcttgg 5273632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 198
Target Start/End: Original strand, 19553454 - 19553488
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttgg 198  Q
    ||||| |||||||||||||||||||||||||||||    
T  19553454 aacccgcttgggttggcctggtggtattggcttgg 19553488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 198
Target Start/End: Complemental strand, 25021411 - 25021377
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttgg 198  Q
    ||||||||||||||||||| |||||||||||||||    
T  25021411 aacccacttgggttggcctagtggtattggcttgg 25021377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 198
Target Start/End: Complemental strand, 26459486 - 26459452
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttgg 198  Q
    ||||||||||||||||||| |||||||||||||||    
T  26459486 aacccacttgggttggcctagtggtattggcttgg 26459452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 198
Target Start/End: Complemental strand, 35328950 - 35328916
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttgg 198  Q
    ||||||||||||||||||||||||| |||||||||    
T  35328950 aacccacttgggttggcctggtggtgttggcttgg 35328916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 198
Target Start/End: Complemental strand, 39499795 - 39499761
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttgg 198  Q
    ||||||||||||||||||| |||||||||||||||    
T  39499795 aacccacttgggttggcctagtggtattggcttgg 39499761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 198
Target Start/End: Original strand, 39631844 - 39631878
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttgg 198  Q
    ||||||||||||||||||| |||||||||||||||    
T  39631844 aacccacttgggttggcctagtggtattggcttgg 39631878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 198
Target Start/End: Complemental strand, 42836077 - 42836043
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttgg 198  Q
    ||||||||||||||||||| |||||||||||||||    
T  42836077 aacccacttgggttggcctagtggtattggcttgg 42836043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 197
Target Start/End: Complemental strand, 48039724 - 48039690
Alignment:
Q  163 caacccacttgggttggcctggtggtattggcttg 197  Q
    |||||||||||||||||||||||||| ||||||||    
T  48039724 caacccacttgggttggcctggtggtgttggcttg 48039690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 198
Target Start/End: Original strand, 48771938 - 48771972
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttgg 198  Q
    ||||||||||||||||| |||||||||||||||||    
T  48771938 aacccacttgggttggcttggtggtattggcttgg 48771972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 197
Target Start/End: Original strand, 24513797 - 24513830
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttg 197  Q
    ||||||||||||||||||| ||||||||||||||    
T  24513797 aacccacttgggttggcctagtggtattggcttg 24513830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 2446308 - 2446356
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttggtactttggaatgtg 212  Q
    |||||||||||||||| ||| |||||||||||||| |||| ||| ||||    
T  2446308 aacccacttgggttggtctgatggtattggcttgggacttgggagtgtg 2446356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 5579310 - 5579262
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttggtactttggaatgtg 212  Q
    ||||||||||||||| ||||||||| ||||||||| || ||||| ||||    
T  5579310 aacccacttgggttgacctggtggtgttggcttgggaccttggagtgtg 5579262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 11721036 - 11720988
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttggtactttggaatgtg 212  Q
    |||| |||| ||||||||||||||||||||||||| || | ||||||||    
T  11721036 aaccaacttcggttggcctggtggtattggcttgggacctgggaatgtg 11720988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 25956368 - 25956320
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttggtactttggaatgtg 212  Q
    |||||| |||||||||||| ||||||||||||||| || ||||| ||||    
T  25956368 aacccatttgggttggcctagtggtattggcttgggaccttggagtgtg 25956320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 48125250 - 48125202
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttggtactttggaatgtg 212  Q
    |||||||||||||||| |||||||| ||||||||| || ||||| ||||    
T  48125250 aacccacttgggttggtctggtggtgttggcttgggaccttggagtgtg 48125202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 163 - 198
Target Start/End: Complemental strand, 19528404 - 19528369
Alignment:
Q  163 caacccacttgggttggcctggtggtattggcttgg 198  Q
    ||||||||||||||||||||||||||||||||||||    
T  19528404 caacccacttgggttggcctggtggtattggcttgg 19528369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 197
Target Start/End: Original strand, 40257399 - 40257432
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttg 197  Q
    ||||||||||||||||||||||||||||||||||    
T  40257399 aacccacttgggttggcctggtggtattggcttg 40257432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 15581217 - 15581169
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttggtactttggaatgtg 212  Q
    ||||||||||||||||||||||||| ||||||||| || ||||| ||||    
T  15581217 aacccacttgggttggcctggtggtgttggcttgggaccttggagtgtg 15581169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 31794340 - 31794292
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttggtactttggaatgtg 212  Q
    ||||||||||||||||||| ||||||||||||||| |||| ||| ||||    
T  31794340 aacccacttgggttggcctagtggtattggcttgggacttgggagtgtg 31794292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 52116857 - 52116809
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttggtactttggaatgtg 212  Q
    |||||| |||||||||||||||||||||||||||| |||| ||| ||||    
T  52116857 aacccagttgggttggcctggtggtattggcttgggacttgggagtgtg 52116809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 198
Target Start/End: Complemental strand, 9165271 - 9165237
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttgg 198  Q
    ||||||||||||||||||| |||||||||||||||    
T  9165271 aacccacttgggttggcctagtggtattggcttgg 9165237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 197
Target Start/End: Original strand, 21694445 - 21694479
Alignment:
Q  163 caacccacttgggttggcctggtggtattggcttg 197  Q
    |||||||||||||||| ||||||||||||||||||    
T  21694445 caacccacttgggttgacctggtggtattggcttg 21694479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 198
Target Start/End: Original strand, 36371470 - 36371504
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttgg 198  Q
    ||||||||||||||||||| |||||||||||||||    
T  36371470 aacccacttgggttggcctagtggtattggcttgg 36371504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 215
Target Start/End: Complemental strand, 16170055 - 16170003
Alignment:
Q  163 caacccacttgggttggcctggtggtattggcttggtactttggaatgtgttc 215  Q
    ||||||||||||||| |||||||||||||| ||||| || | ||| |||||||    
T  16170055 caacccacttgggttagcctggtggtattgacttgggacctgggagtgtgttc 16170003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 195
Target Start/End: Complemental strand, 24857907 - 24857875
Alignment:
Q  163 caacccacttgggttggcctggtggtattggct 195  Q
    |||||||||||||||||||||||||| ||||||    
T  24857907 caacccacttgggttggcctggtggtgttggct 24857875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 198
Target Start/End: Complemental strand, 33700847 - 33700815
Alignment:
Q  166 cccacttgggttggcctggtggtattggcttgg 198  Q
    ||||||||||||||||| |||||||||||||||    
T  33700847 cccacttgggttggcctagtggtattggcttgg 33700815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 37046985 - 37047033
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttggtactttggaatgtg 212  Q
    |||||||||||||||| |||||||| ||||||||| || ||||| ||||    
T  37046985 aacccacttgggttggtctggtggtgttggcttgggaccttggagtgtg 37047033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 196
Target Start/End: Complemental strand, 37310052 - 37310020
Alignment:
Q  164 aacccacttgggttggcctggtggtattggctt 196  Q
    |||||||||||||||||||||||||||| ||||    
T  37310052 aacccacttgggttggcctggtggtattagctt 37310020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 198
Target Start/End: Original strand, 21589288 - 21589322
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttgg 198  Q
    |||||||||||||||||||||||||||||||||||    
T  21589288 aacccacttgggttggcctggtggtattggcttgg 21589322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 16457810 - 16457858
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttggtactttggaatgtg 212  Q
    ||||||||| ||||||||||||||||||||||||| || ||||| ||||    
T  16457810 aacccacttaggttggcctggtggtattggcttgggaccttggagtgtg 16457858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 198
Target Start/End: Complemental strand, 21549215 - 21549179
Alignment:
Q  162 gcaacccacttgggttggcctggtggtattggcttgg 198  Q
    ||||||||||||||||||||| |||||||||||||||    
T  21549215 gcaacccacttgggttggcctagtggtattggcttgg 21549179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 25627057 - 25627105
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttggtactttggaatgtg 212  Q
    ||||||||||||||||||| ||||||||||||||| |||| ||| ||||    
T  25627057 aacccacttgggttggcctagtggtattggcttggaacttgggagtgtg 25627105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 198
Target Start/End: Complemental strand, 7918545 - 7918511
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttgg 198  Q
    ||||||||||||||||||| |||||||||||||||    
T  7918545 aacccacttgggttggcctagtggtattggcttgg 7918511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 203
Target Start/End: Complemental strand, 26078134 - 26078088
Alignment:
Q  157 ataaagcaacccacttgggttggcctggtggtattggcttggtactt 203  Q
    |||||| ||||||||||||||||||| |||||||||| |||| ||||    
T  26078134 ataaagaaacccacttgggttggcctagtggtattggtttgggactt 26078088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 32670703 - 32670653
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttggtactttggaatgtgtt 214  Q
    ||||||| ||||||||||||||||||||||||| | | |||||| ||||||    
T  32670703 aacccacctgggttggcctggtggtattggcttaggattttggagtgtgtt 32670653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 197
Target Start/End: Complemental strand, 30109384 - 30109351
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttg 197  Q
    ||||||||||||||||| ||||||||||||||||    
T  30109384 aacccacttgggttggcttggtggtattggcttg 30109351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 8278351 - 8278303
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttggtactttggaatgtg 212  Q
    |||||||||||||||| ||| |||||||||||||| |||| ||| ||||    
T  8278351 aacccacttgggttggtctgatggtattggcttgggacttgggagtgtg 8278303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 198
Target Start/End: Original strand, 37480075 - 37480109
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttgg 198  Q
    |||||||||||||||||||||||||||||||||||    
T  37480075 aacccacttgggttggcctggtggtattggcttgg 37480109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 7799111 - 7799063
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttggtactttggaatgtg 212  Q
    ||||||||||||||| ||||||||||||||||||| |||| ||| ||||    
T  7799111 aacccacttgggttgtcctggtggtattggcttgggacttgggagtgtg 7799063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 23052599 - 23052551
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttggtactttggaatgtg 212  Q
    ||||||||| ||||||||||||||||||||||||| |||| ||| ||||    
T  23052599 aacccacttaggttggcctggtggtattggcttgggacttgggagtgtg 23052551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 212
Target Start/End: Complemental strand, 37756046 - 37755999
Alignment:
Q  165 acccacttgggttggcctggtggtattggcttggtactttggaatgtg 212  Q
    |||||||||||||||| ||||||||||||||||| || | ||||||||    
T  37756046 acccacttgggttggcttggtggtattggcttgggacctgggaatgtg 37755999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 198
Target Start/End: Complemental strand, 42327471 - 42327437
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttgg 198  Q
    ||||||||||||||||||| |||||||||||||||    
T  42327471 aacccacttgggttggcctagtggtattggcttgg 42327437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 198
Target Start/End: Original strand, 42602554 - 42602588
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttgg 198  Q
    ||||||||||||||||||| |||||||||||||||    
T  42602554 aacccacttgggttggcctagtggtattggcttgg 42602588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 198
Target Start/End: Original strand, 42922414 - 42922448
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttgg 198  Q
    ||||||||||||||||||| |||||||||||||||    
T  42922414 aacccacttgggttggcctagtggtattggcttgg 42922448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 197
Target Start/End: Original strand, 342395 - 342428
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttg 197  Q
    ||||||||||||||||||||||||| ||||||||    
T  342395 aacccacttgggttggcctggtggtgttggcttg 342428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 1729816 - 1729864
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttggtactttggaatgtg 212  Q
    |||||||||||||||| || ||||||||||||||| |||| ||| ||||    
T  1729816 aacccacttgggttgggctagtggtattggcttgggacttgggagtgtg 1729864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 11062360 - 11062408
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttggtactttggaatgtg 212  Q
    ||||||||||||||||||| ||| ||||||||||| |||| ||| ||||    
T  11062360 aacccacttgggttggcctagtgatattggcttggaacttgggagtgtg 11062408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 16525178 - 16525226
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttggtactttggaatgtg 212  Q
    |||||||||||||||||||| |||| ||||||||| || ||||| ||||    
T  16525178 aacccacttgggttggcctgatggtgttggcttgggacgttggagtgtg 16525226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 29197452 - 29197404
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttggtactttggaatgtg 212  Q
    ||||||||||||||||| ||||||||||| ||||| |||| ||| ||||    
T  29197452 aacccacttgggttggcttggtggtattgacttgggacttgggagtgtg 29197404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 32106566 - 32106614
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttggtactttggaatgtg 212  Q
    ||||||||||||||||||||||||| ||| ||||| || ||||| ||||    
T  32106566 aacccacttgggttggcctggtggtgttgacttgggaccttggagtgtg 32106614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 6436636 - 6436583
Alignment:
Q  159 aaagcaacccacttgggttggcctggtggtattggcttggtactttggaatgtg 212  Q
    |||| ||||||||||||||| ||||||||||||||||||| |||| ||| ||||    
T  6436636 aaaggaacccacttgggttgccctggtggtattggcttgggacttaggagtgtg 6436583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 163 - 212
Target Start/End: Original strand, 26688864 - 26688913
Alignment:
Q  163 caacccacttgggttggcctggtggtattggcttggtactttggaatgtg 212  Q
    |||||||||||||||||||||||||| ||||||||| || ||||| ||||    
T  26688864 caacccacttgggttggcctggtggtgttggcttgggaccttggagtgtg 26688913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 163 - 212
Target Start/End: Original strand, 29431010 - 29431059
Alignment:
Q  163 caacccacttgggttggcctggtggtattggcttggtactttggaatgtg 212  Q
    |||||||||||||||||||||| ||||||||||||| |||| ||| ||||    
T  29431010 caacccacttgggttggcctggcggtattggcttgggacttgggagtgtg 29431059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 5264544 - 5264592
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttggtactttggaatgtg 212  Q
    ||||||||||||||||||| ||||||||||||||| || | ||||||||    
T  5264544 aacccacttgggttggcctagtggtattggcttggaacctgggaatgtg 5264592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 22269009 - 22268961
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttggtactttggaatgtg 212  Q
    ||||||||||||||||||||||||| ||||||||| || ||||| ||||    
T  22269009 aacccacttgggttggcctggtggtgttggcttgggaccttggagtgtg 22268961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 198
Target Start/End: Original strand, 968362 - 968396
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttgg 198  Q
    |||||||||| ||||||||||||||||||||||||    
T  968362 aacccacttgagttggcctggtggtattggcttgg 968396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 198
Target Start/End: Original strand, 6530807 - 6530841
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttgg 198  Q
    ||||||||||||||||||||||||| |||||||||    
T  6530807 aacccacttgggttggcctggtggtgttggcttgg 6530841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 198
Target Start/End: Original strand, 8484999 - 8485033
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttgg 198  Q
    |||||||||||||||||||||||||||| ||||||    
T  8484999 aacccacttgggttggcctggtggtatttgcttgg 8485033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 198
Target Start/End: Original strand, 16852340 - 16852374
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttgg 198  Q
    ||||||||||||||||||| |||||||||||||||    
T  16852340 aacccacttgggttggcctagtggtattggcttgg 16852374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 198
Target Start/End: Original strand, 18540298 - 18540332
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttgg 198  Q
    ||||||||||||||||||| |||||||||||||||    
T  18540298 aacccacttgggttggcctagtggtattggcttgg 18540332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 198
Target Start/End: Complemental strand, 19703563 - 19703529
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttgg 198  Q
    ||||||||||||||||||| |||||||||||||||    
T  19703563 aacccacttgggttggcctagtggtattggcttgg 19703529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 198
Target Start/End: Complemental strand, 23874458 - 23874424
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttgg 198  Q
    ||||||||||||||||||| |||||||||||||||    
T  23874458 aacccacttgggttggcctagtggtattggcttgg 23874424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 197
Target Start/End: Complemental strand, 3826853 - 3826820
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttg 197  Q
    ||||||||||||||||||| ||||||||||||||    
T  3826853 aacccacttgggttggcctagtggtattggcttg 3826820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 197
Target Start/End: Original strand, 28783060 - 28783093
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttg 197  Q
    ||||||||||||||||| ||||||||||||||||    
T  28783060 aacccacttgggttggcttggtggtattggcttg 28783093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 198
Target Start/End: Complemental strand, 29858124 - 29858091
Alignment:
Q  165 acccacttgggttggcctggtggtattggcttgg 198  Q
    |||||||||| |||||||||||||||||||||||    
T  29858124 acccacttggattggcctggtggtattggcttgg 29858091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 198
Target Start/End: Original strand, 2203494 - 2203526
Alignment:
Q  166 cccacttgggttggcctggtggtattggcttgg 198  Q
    ||||||||||||||||| |||||||||||||||    
T  2203494 cccacttgggttggcctagtggtattggcttgg 2203526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 198
Target Start/End: Original strand, 3624582 - 3624614
Alignment:
Q  166 cccacttgggttggcctggtggtattggcttgg 198  Q
    ||||||||||||||||| |||||||||||||||    
T  3624582 cccacttgggttggcctagtggtattggcttgg 3624614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 215
Target Start/End: Original strand, 36042984 - 36043032
Alignment:
Q  167 ccacttgggttggcctggtggtattggcttggtactttggaatgtgttc 215  Q
    ||||||||||||| ||||||||||||||||||  ||| ||| |||||||    
T  36042984 ccacttgggttgggctggtggtattggcttggatcttgggagtgtgttc 36043032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 196
Target Start/End: Original strand, 40591732 - 40591764
Alignment:
Q  164 aacccacttgggttggcctggtggtattggctt 196  Q
    |||||||||| ||||||||||||||||||||||    
T  40591732 aacccacttgtgttggcctggtggtattggctt 40591764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 44780190 - 44780142
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttggtactttggaatgtg 212  Q
    ||||||||||||||||||| |||| |||||||||| |||| ||| ||||    
T  44780190 aacccacttgggttggcctagtggcattggcttgggacttgggagtgtg 44780142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 196
Target Start/End: Original strand, 45527568 - 45527600
Alignment:
Q  164 aacccacttgggttggcctggtggtattggctt 196  Q
    ||||||||||||||| |||||||||||||||||    
T  45527568 aacccacttgggttgtcctggtggtattggctt 45527600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 21418470 - 21418518
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttggtactttggaatgtg 212  Q
    |||||| |||||||||||||||||||||||||||| |||| ||| ||||    
T  21418470 aacccagttgggttggcctggtggtattggcttgggacttgggagtgtg 21418518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 198
Target Start/End: Complemental strand, 6776679 - 6776649
Alignment:
Q  168 cacttgggttggcctggtggtattggcttgg 198  Q
    |||||||||||||||||||||||||||||||    
T  6776679 cacttgggttggcctggtggtattggcttgg 6776649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 198
Target Start/End: Complemental strand, 12188379 - 12188345
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttgg 198  Q
    ||||||||||||||||||| |||||||||||||||    
T  12188379 aacccacttgggttggcctagtggtattggcttgg 12188345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 198
Target Start/End: Original strand, 30127400 - 30127434
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttgg 198  Q
    |||||||||||||||| ||||||||||||||||||    
T  30127400 aacccacttgggttggtctggtggtattggcttgg 30127434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 198
Target Start/End: Original strand, 33549104 - 33549138
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttgg 198  Q
    |||||||||||||||| ||||||||||||||||||    
T  33549104 aacccacttgggttggtctggtggtattggcttgg 33549138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 198
Target Start/End: Complemental strand, 32613214 - 32613182
Alignment:
Q  166 cccacttgggttggcctggtggtattggcttgg 198  Q
    ||||||||||||||||||||||||||| |||||    
T  32613214 cccacttgggttggcctggtggtattgacttgg 32613182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 163 - 198
Target Start/End: Complemental strand, 15400 - 15365
Alignment:
Q  163 caacccacttgggttggcctggtggtattggcttgg 198  Q
    ||||||||||||||||| ||||||||||||||||||    
T  15400 caacccacttgggttggtctggtggtattggcttgg 15365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 164 - 195
Target Start/End: Complemental strand, 32845 - 32814
Alignment:
Q  164 aacccacttgggttggcctggtggtattggct 195  Q
    ||||||||||||||||||||||||||||||||    
T  32845 aacccacttgggttggcctggtggtattggct 32814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 163 - 198
Target Start/End: Original strand, 112281 - 112316
Alignment:
Q  163 caacccacttgggttggcctggtggtattggcttgg 198  Q
    ||||||||||||||||||||||| ||||||||||||    
T  112281 caacccacttgggttggcctggttgtattggcttgg 112316  T

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Target: scaffold0118 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 197
Target Start/End: Complemental strand, 41709 - 41676
Alignment:
Q  164 aacccacttgggttggcctggtggtattggcttg 197  Q
    ||||||||||||||||||| ||||||||||||||    
T  41709 aacccacttgggttggcctagtggtattggcttg 41676  T

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Target: scaffold0211 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 24049 - 24101
Alignment:
Q  160 aagcaacccacttgggttggcctggtggtattggcttggtactttggaatgtg 212  Q
    |||||||||||||||||||||||  |||||||| ||||| |||| ||| ||||    
T  24049 aagcaacccacttgggttggcctaatggtattgacttgggacttaggagtgtg 24101  T

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Target: scaffold0101 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 43401 - 43357
Alignment:
Q  171 ttgggttggcctggtggtattggcttggtactttggaatgtgttc 215  Q
    |||||||||| ||||||||||||||||| |||| ||| |||||||    
T  43401 ttgggttggcatggtggtattggcttgggacttgggagtgtgttc 43357  T

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