View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18669_low_15 (Length: 322)

Name: NF18669_low_15
Description: NF18669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18669_low_15
NF18669_low_15
[»] chr8 (1 HSPs)
chr8 (14-322)||(37502840-37503148)


Alignment Details
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 14 - 322
Target Start/End: Complemental strand, 37503148 - 37502840
Alignment:
Q  14 aatatcaactaccttcttgactcaaaatccacattttccatttgatgctcatggctccacttgattgttcacaatgatccacatggttctccttcgtcca 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  37503148 aatatcaactaccttcttgactcaaaatccacattttccatttgatggtcatggctccacttgattgctcacaatgatccacatggttctccttcgtcca 37503049  T
Q  114 ccaaacaaatttggaaaaaacaattctgttttaacacgcacaaaaccactcgaatcatttctgatgcaggcaccaatgccttctccattactagcattgg 213  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37503048 ccaaacaaatttggaaaaaacaattctgttttaacacgcacgaaaccactcgaatcatttctgatgcaggcaccaatgccttctccattactagcattgg 37502949  T
Q  214 aaaatgaggcattgatattgcattacagcatatttggatcaggtttcaaccatctatctctataattggagcaacagctcgtttctgcttctgtctcata 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  37502948 aaaatgaggcattgatattgcattacagcatatttggatcaggtttcaaccatctatctctataattggagtaacagctcgtttctgcttctgcctcata 37502849  T
Q  314 gtctgcgct 322  Q
    |||||||||    
T  37502848 gtctgcgct 37502840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University