View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18669_low_17 (Length: 308)
Name: NF18669_low_17
Description: NF18669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18669_low_17 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 10 - 292
Target Start/End: Complemental strand, 5284599 - 5284317
Alignment:
| Q |
10 |
gacttcagaacaaacaaccaacacacgagcacctttgttgttctcagctaaatctttggccaaacgaagtaccgtaccacctgcaaaacacccttgttgg |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5284599 |
gacttcagaacaaacaaccaacacacgagcacctttgttgttctcagctaaatctttggccaaacgaagtaccgtaccacctgcaaaacacccttgttgg |
5284500 |
T |
|
| Q |
110 |
tacatcatgtaccttttcacatatgggcgaagacccaagagtttggtgagttgataatcggctccaggcatgtctactccacttgtggtgcaaacgatta |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
5284499 |
tacatcatgtaccttttcacatatgggcgaagacccaagagtttggtgagttgataatcggctccaggcatgtctacaccacttgtggtgcaaacgatta |
5284400 |
T |
|
| Q |
210 |
agtgagtaatctttgactttggttgaccccattcttttatagccttcactgcagcctccttccctagtctaggtacctctacc |
292 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
5284399 |
agtgagtaatctttgactttggttggccccattcttttatagccttcactgcagcctcctttcctagtctaggtacctctacc |
5284317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 10 - 292
Target Start/End: Original strand, 5289528 - 5289810
Alignment:
| Q |
10 |
gacttcagaacaaacaaccaacacacgagcacctttgttgttctcagctaaatctttggccaaacgaagtaccgtaccacctgcaaaacacccttgttgg |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
5289528 |
gacttcagaacaaacaaccaacacacgagcacctttgttgttctcagccaaatctttggccaaacgaagcaccgtgccacctgcaaaacacccttgttgg |
5289627 |
T |
|
| Q |
110 |
tacatcatgtaccttttcacatatgggcgaagacccaagagtttggtgagttgataatcggctccaggcatgtctactccacttgtggtgcaaacgatta |
209 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
5289628 |
tacatcatataccttttcacatatggacgaagacccaagagttttgtgagttgataatcggctccaggcatgtctacaccacttgtggtgcaaacgatta |
5289727 |
T |
|
| Q |
210 |
agtgagtaatctttgactttggttgaccccattcttttatagccttcactgcagcctccttccctagtctaggtacctctacc |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
5289728 |
agtgagtaatctttgactttggttgaccccattcttttatagccttcactgcagcctcctttcctagtctaggtacctctacc |
5289810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 10 - 292
Target Start/End: Complemental strand, 5310688 - 5310406
Alignment:
| Q |
10 |
gacttcagaacaaacaaccaacacacgagcacctttgttgttctcagctaaatctttggccaaacgaagtaccgtaccacctgcaaaacacccttgttgg |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
5310688 |
gacttcagaacaaacaaccaacacacgagcacctttgttgttctcagccaaatctttggccaaacgaagcaccgtgccacctgcaaaacacccttgttgg |
5310589 |
T |
|
| Q |
110 |
tacatcatgtaccttttcacatatgggcgaagacccaagagtttggtgagttgataatcggctccaggcatgtctactccacttgtggtgcaaacgatta |
209 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||| ||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
5310588 |
tacatcatataccttttcacatatggacgaaggcccaagagttttgtgagttgataatcagctccaggcatgtctacaccacttgtggtgcaaacgatta |
5310489 |
T |
|
| Q |
210 |
agtgagtaatctttgactttggttgaccccattcttttatagccttcactgcagcctccttccctagtctaggtacctctacc |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
5310488 |
agtgagtaatctttgactttggttgaccccattcttttatagccttcactgcagcctcctttcctagtctaggtacctctacc |
5310406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 17 - 292
Target Start/End: Complemental strand, 5302780 - 5302505
Alignment:
| Q |
17 |
gaacaaacaaccaacacacgagcacctttgttgttctcagctaaatctttggccaaacgaagtaccgtaccacctgcaaaacacccttgttggtacatca |
116 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
5302780 |
gaacatacaaccaacacacgagcacctttgttgttctcagctagatctttggccaaacgaagcaccgtgccacctgcaaaacacccttgttggtacatca |
5302681 |
T |
|
| Q |
117 |
tgtaccttttcacatatgggcgaagacccaagagtttggtgagttgataatcggctccaggcatgtctactccacttgtggtgcaaacgattaagtgagt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
5302680 |
tgtaccttttcacatatgggcgaagacccaagagtttggtgagttgataatcagcttcgggcatgtctacaccacttgtggtgcaaacgattaagtgagt |
5302581 |
T |
|
| Q |
217 |
aatctttgactttggttgaccccattcttttatagccttcactgcagcctccttccctagtctaggtacctctacc |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
5302580 |
aatctttgactttggttgaccccattcttttatagccttcactgcagcctcctttcctagtctaggtacctctacc |
5302505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 10 - 292
Target Start/End: Complemental strand, 5315402 - 5315120
Alignment:
| Q |
10 |
gacttcagaacaaacaaccaacacacgagcacctttgttgttctcagctaaatctttggccaaacgaagtaccgtaccacctgcaaaacacccttgttgg |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| || ||||| ||||||||||| |||||||||||| |
|
|
| T |
5315402 |
gacttcagaacaaacaaccaacacacgagcacctttgttgttctcagccaaatctttagccaaacggagcaccgtgccacctgcaaagcacccttgttgg |
5315303 |
T |
|
| Q |
110 |
tacatcatgtaccttttcacatatgggcgaagacccaagagtttggtgagttgataatcggctccaggcatgtctactccacttgtggtgcaaacgatta |
209 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
5315302 |
tacatcatgtatcttttcacatatgggcgaagacctaatagtttggtgagttgataatctgctccaggcatgtcaacaccacttgtggtgcaaacgatta |
5315203 |
T |
|
| Q |
210 |
agtgagtaatctttgactttggttgaccccattcttttatagccttcactgcagcctccttccctagtctaggtacctctacc |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5315202 |
agtgagtaatctttgactttggttgaccccattcttttatagccttcactgcagcctccttccctagtctaggtacctctacc |
5315120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 5 - 292
Target Start/End: Original strand, 46706814 - 46707101
Alignment:
| Q |
5 |
gcagagacttcagaacaaacaaccaacacacgagcacctttgttgttctcagctaaatctttggccaaacgaagtaccgtaccacctgcaaaacaccctt |
104 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||| |||||||||||||||||||| ||||| || ||||||||||| |||| || |||||||| || |||| |
|
|
| T |
46706814 |
gcagtgacttcagaacaaacaaccaatacacgggcacctttgttgttctcagccaaatcgttagccaaacgaagccccgtgcctcctgcaaagcaacctt |
46706913 |
T |
|
| Q |
105 |
gttggtacatcatgtaccttttcacatatgggcgaagacccaagagtttggtgagttgataatcggctccaggcatgtctactccacttgtggtgcaaac |
204 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||| ||||| ||||||||||||||||| ||||| || |||||||| |
|
|
| T |
46706914 |
gttggtacatcatataccttttcacatatgggcgaagaccgaagagttttgtgagttggtaatcagctccaggcatgtctacaccactagtagtgcaaac |
46707013 |
T |
|
| Q |
205 |
gattaagtgagtaatctttgactttggttgaccccattcttttatagccttcactgcagcctccttccctagtctaggtacctctacc |
292 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46707014 |
gattaagtgggtaatctttgactttggttgaccccattcttttatagccttcactgcagcctccttccctagtctaggtacctctacc |
46707101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 5 - 292
Target Start/End: Complemental strand, 1492464 - 1492177
Alignment:
| Q |
5 |
gcagagacttcagaacaaacaaccaacacacgagcacctttgttgttctcagctaaatctttggccaaacgaagtaccgtaccacctgcaaaacaccctt |
104 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||| || ||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
1492464 |
gcagtgacttcagaacaaacaactaacacacgagcacctttgttgttctcagccaaatccttagccaaacgaagtaccgtgccacctgcaaaacaacctt |
1492365 |
T |
|
| Q |
105 |
gttggtacatcatgtaccttttcacatatgggcgaagacccaagagtttggtgagttgataatcggctccaggcatgtctactccacttgtggtgcaaac |
204 |
Q |
| |
|
| |||||||||||||| ||||| |||||||| |||||||| |||||||| ||||||||||||||||| |||||||||||||| || |||||||||||||| |
|
|
| T |
1492364 |
gctggtacatcatgtatctttttacatatggacgaagacctaagagtttagtgagttgataatcggccccaggcatgtctacaccgcttgtggtgcaaac |
1492265 |
T |
|
| Q |
205 |
gattaagtgagtaatctttgactttggttgaccccattcttttatagccttcactgcagcctccttccctagtctaggtacctctacc |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1492264 |
gattaagtgagtaatctttgactttggttgaccccattcttttatagccttcactgcagcctccttccctagtctaggtacttctacc |
1492177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 5 - 292
Target Start/End: Complemental strand, 1505273 - 1504986
Alignment:
| Q |
5 |
gcagagacttcagaacaaacaaccaacacacgagcacctttgttgttctcagctaaatctttggccaaacgaagtaccgtaccacctgcaaaacaccctt |
104 |
Q |
| |
|
|||| |||||| ||||| |||||||||||||| |||||||||||||||||||| || || |||||||||||||| ||||| |||||||||||||| |||| |
|
|
| T |
1505273 |
gcagtgacttcggaacagacaaccaacacacgggcacctttgttgttctcagccaagtccttggccaaacgaagcaccgtcccacctgcaaaacatcctt |
1505174 |
T |
|
| Q |
105 |
gttggtacatcatgtaccttttcacatatgggcgaagacccaagagtttggtgagttgataatcggctccaggcatgtctactccacttgtggtgcaaac |
204 |
Q |
| |
|
| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
1505173 |
gctggtacatcatgtacctcttcacatatgggcgaagacctaagagtttggtgagttggtaatcagctccaggcatgtctacaccacttgtggtgcaaac |
1505074 |
T |
|
| Q |
205 |
gattaagtgagtaatctttgactttggttgaccccattcttttatagccttcactgcagcctccttccctagtctaggtacctctacc |
292 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| || || ||||||||||| ||||||||||||||||||||| |
|
|
| T |
1505073 |
aattaagtgagtaatctttgactttggctgaccccattcttttatagcttttacggcagcctcctttcctagtctaggtacctctacc |
1504986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 11 - 292
Target Start/End: Complemental strand, 1478289 - 1478008
Alignment:
| Q |
11 |
acttcagaacaaacaaccaacacacgagcacctttgttgttctcagctaaatctttggccaaacgaagtaccgtaccacctgcaaaacacccttgttggt |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||| || || |||||||||||||| ||||| |||||||||||||| |||||||||| |
|
|
| T |
1478289 |
acttcagaacaaacaaccaacacacgagcacctttattgttctcagccaagtccttggccaaacgaagcaccgtcccacctgcaaaacatccttgttggt |
1478190 |
T |
|
| Q |
111 |
acatcatgtaccttttcacatatgggcgaagacccaagagtttggtgagttgataatcggctccaggcatgtctactccacttgtggtgcaaacgattaa |
210 |
Q |
| |
|
||||||| ||||| ||||||||||| |||||||| ||||||||||||||||| ||||| || |||||||||||||| |||||||||||||||| ||| || |
|
|
| T |
1478189 |
acatcatatacctcttcacatatggacgaagacctaagagtttggtgagttggtaatcagcgccaggcatgtctacaccacttgtggtgcaaaagatcaa |
1478090 |
T |
|
| Q |
211 |
gtgagtaatctttgactttggttgaccccattcttttatagccttcactgcagcctccttccctagtctaggtacctctacc |
292 |
Q |
| |
|
||| ||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
1478089 |
gtgtgtaatctttgattttggttggccccattcttttatagctttcactgcagcctcctttcctagtctaggtacttctacc |
1478008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 11 - 292
Target Start/End: Complemental strand, 1482483 - 1482202
Alignment:
| Q |
11 |
acttcagaacaaacaaccaacacacgagcacctttgttgttctcagctaaatctttggccaaacgaagtaccgtaccacctgcaaaacacccttgttggt |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || |||||||| || || |||||||||||||| ||||| ||||||||||| || |||||||||| |
|
|
| T |
1482483 |
acttcagaacaaacaaccaacacacgagcacctttattattctcagccaagtccttggccaaacgaagcaccgtcccacctgcaaagcatccttgttggt |
1482384 |
T |
|
| Q |
111 |
acatcatgtaccttttcacatatgggcgaagacccaagagtttggtgagttgataatcggctccaggcatgtctactccacttgtggtgcaaacgattaa |
210 |
Q |
| |
|
|||||||||| || ||||||||||| |||||||| |||||||| |||||||| |||||||| |||||||||||||| ||||||||||| |||| ||||| |
|
|
| T |
1482383 |
acatcatgtatctcttcacatatggacgaagacctaagagttttgtgagttggtaatcggcaccaggcatgtctacaccacttgtggtacaaaatattaa |
1482284 |
T |
|
| Q |
211 |
gtgagtaatctttgactttggttgaccccattcttttatagccttcactgcagcctccttccctagtctaggtacctctacc |
292 |
Q |
| |
|
||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
1482283 |
gtgtgtaatctttgattttggttggccccattcttttatagccttcactgcagcctcctttcctagtctaggcacctctacc |
1482202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 13 - 292
Target Start/End: Complemental strand, 1499528 - 1499249
Alignment:
| Q |
13 |
ttcagaacaaacaaccaacacacgagcacctttgttgttctcagctaaatctttggccaaacgaagtaccgtaccacctgcaaaacacccttgttggtac |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| || || |||||||||||||| || ||||||||| |||||||| |||||||| |
|
|
| T |
1499528 |
ttcagaacaaacaaccaacacacgagcacctttgttattctcagctaagtccttcgccaaacgaagtactgttccacctgcataacaccctagttggtac |
1499429 |
T |
|
| Q |
113 |
atcatgtaccttttcacatatgggcgaagacccaagagtttggtgagttgataatcggctccaggcatgtctactccacttgtggtgcaaacgattaagt |
212 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||| || ||||| ||||| || |||||||||||||| ||||| |||||||| ||||| | |
|
|
| T |
1499428 |
atcatgtaccttttcacatatgggttaagacctaagagttttgttagttggtaatccgcaccaggcatgtctacaccactataggtgcaaaaaattaaat |
1499329 |
T |
|
| Q |
213 |
gagtaatctttgactttggttgaccccattcttttatagccttcactgcagcctccttccctagtctaggtacctctacc |
292 |
Q |
| |
|
| ||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1499328 |
gtgtaatatttgacttcggttgaccccattcttcgatagccttcactgcagcctccttccctagtctaggtatctctacc |
1499249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 10 - 287
Target Start/End: Complemental strand, 1509415 - 1509138
Alignment:
| Q |
10 |
gacttcagaacaaacaaccaacacacgagcacctttgttgttctcagctaaatctttggccaaacgaagtaccgtaccacctgcaaaacacccttgttgg |
109 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||| ||| || ||||| ||||| || |||||| |||| || || |||||||||||||||| ||||||| |
|
|
| T |
1509415 |
gactttagaacaaacaaccaacacacgagcatcttggttattttcagccaaatcctttgccaaatgaagcacagtgccacctgcaaaacacctttgttgg |
1509316 |
T |
|
| Q |
110 |
tacatcatgtaccttttcacatatgggcgaagacccaagagtttggtgagttgataatcggctccaggcatgtctactccacttgtggtgcaaacgatta |
209 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||| || |||||||| |||||||||| ||||||| ||| || || |||||||||||||||| ||||| |
|
|
| T |
1509315 |
tacatcatgtacctttttacatatgggtgaagacctaaaagtttggtaagttgataatgagctccagacatatcaacaccacttgtggtgcaaaagatta |
1509216 |
T |
|
| Q |
210 |
agtgagtaatctttgactttggttgaccccattcttttatagccttcactgcagcctccttccctagtctaggtacct |
287 |
Q |
| |
|
| || ||||||||||| ||||| || ||||||||||||||||||||||||||| |||| || ||||| |||||||||| |
|
|
| T |
1509215 |
aatgtgtaatctttgattttggctggccccattcttttatagccttcactgcaacctcttttcctagcctaggtacct |
1509138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 10 - 282
Target Start/End: Complemental strand, 1486961 - 1486689
Alignment:
| Q |
10 |
gacttcagaacaaacaaccaacacacgagcacctttgttgttctcagctaaatctttggccaaacgaagtaccgtaccacctgcaaaacacccttgttgg |
109 |
Q |
| |
|
|||||||||||| | ||||||||| ||||| |||| ||||||||||| || || |||||| |||| || || || || |||||||| || ||||||||| |
|
|
| T |
1486961 |
gacttcagaacatattaccaacacaagagcatctttattgttctcagccaagtccttggcctaacgtagaacagtgccccctgcaaagcatccttgttgg |
1486862 |
T |
|
| Q |
110 |
tacatcatgtaccttttcacatatgggcgaagacccaagagtttggtgagttgataatcggctccaggcatgtctactccacttgtggtgcaaacgatta |
209 |
Q |
| |
|
|| ||||| |||| |||||||| |||| |||||| |||||||| |||||||| |||||||| ||||||||| ||| ||||| ||||||||| |||| |
|
|
| T |
1486861 |
tatatcatataccgtttcacatccgggcaaagacctaagagttttgtgagttggtaatcggcaccaggcatgcctataccactcatggtgcaaaatatta |
1486762 |
T |
|
| Q |
210 |
agtgagtaatctttgactttggttgaccccattcttttatagccttcactgcagcctccttccctagtctagg |
282 |
Q |
| |
|
|||| |||||||||||||||||||| ||| ||||||||||||| |||||||||||||| || ||||| ||||| |
|
|
| T |
1486761 |
agtgtgtaatctttgactttggttggccctattcttttatagctttcactgcagcctcatttcctagcctagg |
1486689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 5 - 292
Target Start/End: Complemental strand, 44128870 - 44128583
Alignment:
| Q |
5 |
gcagagacttcagaacaaacaaccaacacacgagcacctttgttgttctcagctaaatctttggccaaacgaagtaccgtaccacctgcaaaacaccctt |
104 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| || |||||||| || |||| |
|
|
| T |
44128870 |
gcagtgacttcagaacagacaaccaacacacgagcacctttgttgttttcagctaaatctttagccaaacgaaggaccgtgcctcctgcaaagcaacctt |
44128771 |
T |
|
| Q |
105 |
gttggtacatcatgtaccttttcacatatgggcgaagacccaagagtttggtgagttgataatcggctccaggcatgtctactccacttgtggtgcaaac |
204 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||| ||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
44128770 |
gttggtacatcatataccttttcacatatgggcgaagacctaagagttttgtgagttggtaatcagctccaggcatgtctacaccacttgtggtgcaaac |
44128671 |
T |
|
| Q |
205 |
gattaagtgagtaatctttgactttggttgaccccattcttttatagccttcactgcagcctccttccctagtctaggtacctctacc |
292 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44128670 |
gatcaagtgagtaatctttgactttggttgaccccattcttttatggccttcactgcagcctccttccctagtctaggtacctctacc |
44128583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 5 - 292
Target Start/End: Complemental strand, 44133075 - 44132788
Alignment:
| Q |
5 |
gcagagacttcagaacaaacaaccaacacacgagcacctttgttgttctcagctaaatctttggccaaacgaagtaccgtaccacctgcaaaacaccctt |
104 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| || |||||||| || |||| |
|
|
| T |
44133075 |
gcagtgacttcagaacagacaaccaacacacgagcacctttgttgttttcagctaaatctttagccaaacgaaggaccgtgcctcctgcaaagcaacctt |
44132976 |
T |
|
| Q |
105 |
gttggtacatcatgtaccttttcacatatgggcgaagacccaagagtttggtgagttgataatcggctccaggcatgtctactccacttgtggtgcaaac |
204 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||| ||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
44132975 |
gttggtacatcatataccttttcacatatgggcgaagacctaagagttttgtgagttggtaatcagctccaggcatgtctacaccacttgtggtgcaaac |
44132876 |
T |
|
| Q |
205 |
gattaagtgagtaatctttgactttggttgaccccattcttttatagccttcactgcagcctccttccctagtctaggtacctctacc |
292 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44132875 |
gatcaagtgagtaatctttgactttggttgaccccattcttttatggccttcactgcagcctccttccctagtctaggtacctctacc |
44132788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 5 - 292
Target Start/End: Complemental strand, 44141497 - 44141210
Alignment:
| Q |
5 |
gcagagacttcagaacaaacaaccaacacacgagcacctttgttgttctcagctaaatctttggccaaacgaagtaccgtaccacctgcaaaacaccctt |
104 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| || |||||||| || |||| |
|
|
| T |
44141497 |
gcagtgacttcagaacagacaaccaacacacgagcacctttgttgttttcagctaaatctttagccaaacgaaggaccgtgcctcctgcaaagcaacctt |
44141398 |
T |
|
| Q |
105 |
gttggtacatcatgtaccttttcacatatgggcgaagacccaagagtttggtgagttgataatcggctccaggcatgtctactccacttgtggtgcaaac |
204 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||| ||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
44141397 |
gttggtacatcatataccttttcacatatgggcgaagacctaagagttttgtgagttggtaatcagctccaggcatgtctacaccacttgtggtgcaaac |
44141298 |
T |
|
| Q |
205 |
gattaagtgagtaatctttgactttggttgaccccattcttttatagccttcactgcagcctccttccctagtctaggtacctctacc |
292 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44141297 |
gatcaagtgagtaatctttgactttggttgaccccattcttttatggccttcactgcagcctccttccctagtctaggtacctctacc |
44141210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 173; Significance: 5e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 11 - 291
Target Start/End: Original strand, 24163622 - 24163902
Alignment:
| Q |
11 |
acttcagaacaaacaaccaacacacgagcacctttgttgttctcagctaaatctttggccaaacgaagtaccgtaccacctgcaaaacacccttgttggt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||| || || |||||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
24163622 |
acttcagaacaaacaaccaacacacgagaacctttgttgttctcagccaagtccttggccaagcgaagtaccgtgccacctgcaaaacacccttgttggt |
24163721 |
T |
|
| Q |
111 |
acatcatgtaccttttcacatatgggcgaagacccaagagtttggtgagttgataatcggctccaggcatgtctactccacttgtggtgcaaacgattaa |
210 |
Q |
| |
|
||||||| |||||||| ||| ||||||||||||| |||||||| |||||||| |||||||| |||||||| ||||| |||||| | ||||||| ||||| |
|
|
| T |
24163722 |
acatcatatacctttttacacatgggcgaagacctaagagttttgtgagttggtaatcggcaccaggcatatctacaccacttatagtgcaaaatattaa |
24163821 |
T |
|
| Q |
211 |
gtgagtaatctttgactttggttgaccccattcttttatagccttcactgcagcctccttccctagtctaggtacctctac |
291 |
Q |
| |
|
||| || ||||||||||||||||| ||||||||||||||||||||||| || |||||||| |||||||| ||| ||||||| |
|
|
| T |
24163822 |
gtgtgtgatctttgactttggttggccccattcttttatagccttcacggctgcctcctttcctagtcttggtgcctctac |
24163902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 17 - 288
Target Start/End: Original strand, 37859202 - 37859473
Alignment:
| Q |
17 |
gaacaaacaaccaacacacgagcacctttgttgttctcagctaaatctttggccaaacgaagtaccgtaccacctgcaaaacacccttgttggtacatca |
116 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||| || ||||| ||||||||||| ||||| ||||| |||||||| |||||||||||||||| |
|
|
| T |
37859202 |
gaacaaactaccaacacacgagcacctttgttgttttcagccaagtctttagccaaacgaagcaccgtgccaccagcaaaacaaccttgttggtacatca |
37859301 |
T |
|
| Q |
117 |
tgtaccttttcacatatgggcgaagacccaagagtttggtgagttgataatcggctccaggcatgtctactccacttgtggtgcaaacgattaagtgagt |
216 |
Q |
| |
|
|||| | ||||||||||| ||||| |||||||| || || || ||||| ||||| || |||||||| || ||||| |||||||||| ||| | ||| || |
|
|
| T |
37859302 |
tgtaacgcttcacatatggacgaaggcccaagagctttgtcagctgatagtcggcaccgggcatgtccacgccactggtggtgcaaaagatgaggtgggt |
37859401 |
T |
|
| Q |
217 |
aatctttgactttggttgaccccattcttttatagccttcactgcagcctccttccctagtctaggtacctc |
288 |
Q |
| |
|
|||||| ||||| |||||||||||||| || || ||||| ||| ||||| || |||||||| |||||||| |
|
|
| T |
37859402 |
aatcttggacttaggttgaccccattccttgatggcctttgttgctgcctcttttcctagtcttggtacctc |
37859473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 17 - 276
Target Start/End: Original strand, 37863228 - 37863487
Alignment:
| Q |
17 |
gaacaaacaaccaacacacgagcacctttgttgttctcagctaaatctttggccaaacgaagtaccgtaccacctgcaaaacacccttgttggtacatca |
116 |
Q |
| |
|
|||||||| ||||| |||||||| ||||||||||| ||||| |||||||| ||||||||||| ||||| ||||| |||||||| |||||||| ||||||| |
|
|
| T |
37863228 |
gaacaaaccaccaaaacacgagcgcctttgttgttttcagccaaatctttagccaaacgaagcaccgtcccaccagcaaaacaaccttgttgatacatca |
37863327 |
T |
|
| Q |
117 |
tgtaccttttcacatatgggcgaagacccaagagtttggtgagttgataatcggctccaggcatgtctactccacttgtggtgcaaacgattaagtgagt |
216 |
Q |
| |
|
| || | |||||||| ||||||||||||||||| || ||||| ||||| || || |||||||| || || |||||||||||||||| |||| ||||| |
|
|
| T |
37863328 |
tataacgcttcacatacgggcgaagacccaagagctttgtgagctgatagtcagcaccaggcatatccacaccacttgtggtgcaaaaaattagatgagt |
37863427 |
T |
|
| Q |
217 |
aatctttgactttggttgaccccattcttttatagccttcactgcagcctccttccctag |
276 |
Q |
| |
|
|||||||||||| |||||||||||||| || |||||||| ||||||||| || ||||| |
|
|
| T |
37863428 |
aatctttgacttaggttgaccccattccttgatagcctttgttgcagcctcttttcctag |
37863487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 28 - 255
Target Start/End: Complemental strand, 39030344 - 39030117
Alignment:
| Q |
28 |
caacacacgagcacctttgttgttctcagctaaatctttggccaaacgaagtaccgtaccacctgcaaaacacccttgttggtacatcatgtaccttttc |
127 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||| ||||| ||||| || | |||| |||||||| ||||||||||||||||| || | || |
|
|
| T |
39030344 |
caacacacgggcacctttgttgttctcagccaaatctttagccaagcgaagagccatcgcaccagcaaaacaaccttgttggtacatcatataacgcttt |
39030245 |
T |
|
| Q |
128 |
acatatgggcgaagacccaagagtttggtgagttgataatcggctccaggcatgtctactccacttgtggtgcaaacgattaagtgagtaatctttgact |
227 |
Q |
| |
|
|||||||| | ||| || ||||| || ||||| ||||| || ||||||||||| || || ||||||| ||||||| || | ||||||| | |||||| |
|
|
| T |
39030244 |
acatatggacaaaggcctaagagctttgtgagctgatagtcagctccaggcatatcgacaccacttgaagtgcaaaatatgagatgagtaaccattgact |
39030145 |
T |
|
| Q |
228 |
ttggttgaccccattcttttatagcctt |
255 |
Q |
| |
|
| |||||||||||||| || |||||||| |
|
|
| T |
39030144 |
taggttgaccccattcattgatagcctt |
39030117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 32 - 243
Target Start/End: Complemental strand, 35251080 - 35250869
Alignment:
| Q |
32 |
acacgagcacctttgttgttctcagctaaatctttggccaaacgaagtaccgtaccacctgcaaaacacccttgttggtacatcatgtaccttttcacat |
131 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||| ||||||||||| ||| ||||||| || ||||||||||||||||||||||| || | |||||| |
|
|
| T |
35251080 |
acacgagcacctttattgttctcagccaaatctttagccaaacgaagaaccataccaccagcgaaacacccttgttggtacatcatataacgtttcaccg |
35250981 |
T |
|
| Q |
132 |
atgggcgaagacccaagagtttggtgagttgataatcggctccaggcatgtctactccacttgtggtgcaaacgattaagtgagtaatctttgactttgg |
231 |
Q |
| |
|
| || ||||| || | | ||| ||||| |||||||| || |||||||| || || ||||| || |||||| || | |||||| ||||| |||||||| |
|
|
| T |
35250980 |
acggacgaagtcctagcaattttgtgagctgataatcagcaccaggcatatccacaccactagtaatgcaaaatatgaggtgagtgatcttggactttgg |
35250881 |
T |
|
| Q |
232 |
ttgaccccattc |
243 |
Q |
| |
|
|||||||||||| |
|
|
| T |
35250880 |
ttgaccccattc |
35250869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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