View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18669_low_18 (Length: 293)
Name: NF18669_low_18
Description: NF18669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18669_low_18 |
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| [»] scaffold1128 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 19 - 292
Target Start/End: Original strand, 23039985 - 23040258
Alignment:
| Q |
19 |
aatgcagccatttcattgttctctgatgccttaaaatcactccaatttaattttgctaatttcttcccatcttatcctttattataactaccgtatagtt |
118 |
Q |
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| T |
23039985 |
aatgcagccatttcattgttctctgatgccttcaaatcactccaatttaattttgctaatttcttcccatcttatcctttattataactaccgtatagtt |
23040084 |
T |
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| Q |
119 |
tttcaacgaggggtaaacccgaatttttatatctatttgattgtttaacattttatttgaacacaaataacttgaactttcacttttgccactctaatag |
218 |
Q |
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| T |
23040085 |
tttcaatgaggggtaaacctgaatttttatatctatttgattgtttaacattttatttgaacacaaataacttgaactttcacttttgccactctaatag |
23040184 |
T |
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| Q |
219 |
atgtagtaaatagttccaagcagaggataaatgtgtaaaaatggtcagggttatcaacttttcatactacatcc |
292 |
Q |
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| T |
23040185 |
atgtagtaaatagttccaagcagaggataaatgtgtaaaaatggttagggttatcaacttttcatactacatcc |
23040258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1128 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: scaffold1128
Description:
Target: scaffold1128; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 23 - 292
Target Start/End: Original strand, 2261 - 2529
Alignment:
| Q |
23 |
cagccatttcattgttctctgatgccttaaaatcactccaatttaattttgctaatttcttcccatcttatcctttattataactaccgtatagtttttc |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| | |
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| T |
2261 |
cagccatttcattgttctctgatgccttaaaatcactccaatttaattttgccaatttcttcccatcttatcctttattataactaccgtatactttt-c |
2359 |
T |
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| Q |
123 |
aacgaggggtaaacccgaatttttatatctatttgattgtttaacattttatttgaacacaaataacttgaactttcacttttgccactctaatagatgt |
222 |
Q |
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|| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2360 |
aatgagggataaacccgaatttttatatctatttgattgtttaacaatttatttgaacacaaataacttgaacttccacttttgccactctaatagatgt |
2459 |
T |
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| Q |
223 |
agtaaatagttccaagcagaggataaatgtgtaaaaatggtcagggttatcaacttttcatactacatcc |
292 |
Q |
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| T |
2460 |
agtaaatagttccaagcagaggataaatatgtaaaaatggtcaaggttatcaacttttcatactacatcc |
2529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 23 - 292
Target Start/End: Original strand, 27586377 - 27586645
Alignment:
| Q |
23 |
cagccatttcattgttctctgatgccttaaaatcactccaatttaattttgctaatttcttcccatcttatcctttattataactaccgtatagtttttc |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| | |
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| T |
27586377 |
cagccatttcattgttctctgatgccttaaaatcactccaatttaattttgccaatttcttcccatcttatcctttattataactaccgtatactttt-c |
27586475 |
T |
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| Q |
123 |
aacgaggggtaaacccgaatttttatatctatttgattgtttaacattttatttgaacacaaataacttgaactttcacttttgccactctaatagatgt |
222 |
Q |
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|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
27586476 |
aatgagggataaacccgaatttttatatctatttgattgtttaacattttatttgaacacaaataacttgaacttccacttttgccactctaatagatgt |
27586575 |
T |
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| Q |
223 |
agtaaatagttccaagcagaggataaatgtgtaaaaatggtcagggttatcaacttttcatactacatcc |
292 |
Q |
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|||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||| |
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| T |
27586576 |
agtaaatagttccaagcagaggataaatatgtaaaaatagtcaaggttatcaacttttcatactacatcc |
27586645 |
T |
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