View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18669_low_2 (Length: 665)
Name: NF18669_low_2
Description: NF18669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18669_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 580; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 31 - 655
Target Start/End: Complemental strand, 1538346 - 1537716
Alignment:
| Q |
31 |
gctgatgaagaagcaccaccaacacaacctgagcatccctctgtcaatgatagacagaggcttgcaacagtggttggttattcaatccaactacttcttc |
130 |
Q |
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| T |
1538346 |
gctgatgaagaagcaccaccaacacaacctgagcatccctctgtcaatgatagacagaggcttgcaacagtggttagttattcaatccaactacttcttc |
1538247 |
T |
|
| Q |
131 |
tcatttctagttttcttttcacaaatgttgaaggaccaatccatcactatttcattaaccatgaagatgtcagaaaattgttttattcctttatgactgc |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1538246 |
tcatttctagttttcttttcacaaatgttgaaggaccaatccatcactatttcattaaccatgaagatgtcagaaaattgttttattcctttatgactgc |
1538147 |
T |
|
| Q |
231 |
ttttcatctcctctttgttttctctctgttttcaaccattgttcagagacctaggaatggttctctgattgaatgccttgttctattgggcatcaacttt |
330 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1538146 |
ttttcatctcctctttgttttctctctgttttcaaccattgttcagagacctaggaatggttctctgattgaatgccttgttctattgggcatcaacttt |
1538047 |
T |
|
| Q |
331 |
tacatttctatagtctttgttcattatttcaaagatgattatacaaaatatgctataatattctgggtttctttcattgtgttaatcatcatcttcaaaa |
430 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1538046 |
tacatttctatagtctttgttcattatttcaaagatgattatacaaaatatgctataatattctgggtttctttcattgtgttaatcatcatcttcaaaa |
1537947 |
T |
|
| Q |
431 |
ggaaggatttttgcgatcagcttaagttccttgtgcatgttactgggataagttatctgttttgggggataatagctgtcatctgttactgttgtggtta |
530 |
Q |
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| T |
1537946 |
ggaaggatttttgcgatcagcttaagttccttatgcatgttactgggataagttatctgttttgggggataatagctgtcatctgttactgttgtggtta |
1537847 |
T |
|
| Q |
531 |
ctgttgtggtggttgttaccactactgtaaccacaataagtggttttgctactgctttgatcagaaacctgaggt------ggaggaggaggagccgcta |
624 |
Q |
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||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||| |||||||| |||||| ||||||||||||||||||| |
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| T |
1537846 |
ctgttgtggtggttgttaccagtactgtaaccacaataactggttttgctactgcattggtcagaaacttgaggtggtggaggaggaggaggagccgcta |
1537747 |
T |
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| Q |
625 |
atccaaagaaattcaaatgctgtgtgatatt |
655 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
1537746 |
atccaaagaaattcaaatgctgtgtgatatt |
1537716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 33 - 528
Target Start/End: Original strand, 10164263 - 10164737
Alignment:
| Q |
33 |
tgatgaagaagcaccaccaacacaacctgagcatccctctgtcaatgatagacagaggcttgcaacagtggttggttattcaatccaactacttcttctc |
132 |
Q |
| |
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||||||||||||||||||| ||||||| ||||||| |||||||||||||| || ||||||||||||||||||| |||| |||||| ||||| |||||||| |
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| T |
10164263 |
tgatgaagaagcaccaccaccacaacccgagcatcactctgtcaatgatacacggaggcttgcaacagtggttagttactcaatcaaactatttcttctc |
10164362 |
T |
|
| Q |
133 |
atttctagttttcttttcacaaatgttgaaggaccaatccatcactatttcattaaccatgaagatgtcagaaaattgttttattcctttatgactgctt |
232 |
Q |
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||||||| ||||||||||| ||| |||||||||| |||||||||||| ||||||||||| ||||||||| ||| | ||||| ||||||| | ||||||| |
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| T |
10164363 |
atttctacttttcttttcaaaaaccttgaaggaccgatccatcactatctcattaaccataaagatgtcaaaaattcgtttttttcctttgtaactgctt |
10164462 |
T |
|
| Q |
233 |
ttcatctcctctttgttttctctctgttttcaaccattgttcagagacctaggaatggttctctgattgaatgccttgttct-attgggcatcaactttt |
331 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||| |||||||| ||||||||||||||| |
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| T |
10164463 |
ttcatctcctctttgttttctctctgtttgcaaccattgttcagagacctaggaatggttccctgtttgaatgtcttgttctgtttgggcatcaacttta |
10164562 |
T |
|
| Q |
332 |
acatttctatagtctttgttcattatttcaaagatgattatacaaaatatgctataatattctgggtttctttcattgtgttaatcatcatcttcaaaag |
431 |
Q |
| |
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| |||| |||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||| |
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| T |
10164563 |
atattt----------------------caaagatgattatacaaaatatgccataatattatgggtttctttcattgtcttaatcatcatcttcaaaag |
10164640 |
T |
|
| Q |
432 |
gaaggatttttgcgatcagcttaagttccttgtgcatgttactgggataagttatctgttttgggggataatagctgtcatctgttactgttgtggt |
528 |
Q |
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|||||||||||| ||||||||||| |||||| || |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10164641 |
gaaggatttttgggatcagcttaaattccttttgaatgttactgggataagatgtctgttttgggggataatagctgtcatctgttactgttgtggt |
10164737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 355 - 569
Target Start/End: Original strand, 10164564 - 10164766
Alignment:
| Q |
355 |
tatttcaaagatgattatacaaaatatgctataatattctgggtttctttcattgtgttaatcatcatcttcaaaaggaaggatttttgcgatcagctta |
454 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
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| T |
10164564 |
tatttcaaagatgattatacaaaatatgccataatattatgggtttctttcattgtcttaatcatcatcttcaaaaggaaggatttttgggatcagctta |
10164663 |
T |
|
| Q |
455 |
agttccttgtgcatgttactgggataagttatctgttttgggggataatagctgtcatctgttactgttgtggttactgttgtggtggttgttaccacta |
554 |
Q |
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| T |
10164664 |
aattccttttgaatgttactgggataagatgtctgttttgggggataatagctgtcatctgtta------------ctgttgtggtggttgttaccaata |
10164751 |
T |
|
| Q |
555 |
ctgtaaccacaataa |
569 |
Q |
| |
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|||| ||||||||| |
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| T |
10164752 |
ttgtagccacaataa |
10164766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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