View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18669_low_21 (Length: 274)
Name: NF18669_low_21
Description: NF18669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18669_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 6 - 258
Target Start/End: Complemental strand, 1402897 - 1402645
Alignment:
| Q |
6 |
atattagatagttgaagatcttcaagaagtggacatgcatccagaagaaacgtaaattcatgttgatgatgaagataaatgtctttcaaatctagtgttt |
105 |
Q |
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| T |
1402897 |
atattagatagttgaagatcttcaagaagtggacatgcatccagaagaaacgtaaattcatgttgatgatgaagataaatgtctttcaaatgtagtgttt |
1402798 |
T |
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| Q |
106 |
tgagtgagggaaaattataacgagaattagcatccttaaaaaaccaaaaccaacggagtttgagaacaacaagggttgtacaagttaatatactaatagg |
205 |
Q |
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| T |
1402797 |
tgagtgagggaaaattataatgagaattagcatccttaaaaaaccaaaaccaacggagtttgagaacaacaagggttgtacaagttaatatactaatagg |
1402698 |
T |
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| Q |
206 |
caaactaggcgctaatgttagtttcctaatcaacgtattatggtaagttgttc |
258 |
Q |
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| T |
1402697 |
caaactaggggctaatgttagtttcctaatcaacgtattatggtaagttgttc |
1402645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 6 - 233
Target Start/End: Complemental strand, 1399202 - 1398975
Alignment:
| Q |
6 |
atattagatagttgaagatcttcaagaagtggacatgcatccagaagaaacgtaaattcatgttgatgatgaagataaatgtctttcaaatctagtgttt |
105 |
Q |
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| T |
1399202 |
atattagatagttgaagatcttcaagaagtggacaagcatccagaagaaacgtaaattcatgttgatgatgaaggtaaatgtctttcaaatgtagtgtct |
1399103 |
T |
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| Q |
106 |
tgagtgagggaaaattataacgagaattagcatccttaaaaaaccaaaaccaacggagtttgagaacaacaagggttgtacaagttaatatactaatagg |
205 |
Q |
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| T |
1399102 |
ttagtgagggaaaattataatgagaattagcatccataaagaaccaaaaccaacggagtttgagaacaacaagggttgtacaagttaatatactaatagg |
1399003 |
T |
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| Q |
206 |
caaactaggcgctaatgttagtttccta |
233 |
Q |
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| T |
1399002 |
caaactaggggctaatgttagtttccta |
1398975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 6 - 188
Target Start/End: Complemental strand, 820836 - 820654
Alignment:
| Q |
6 |
atattagatagttgaagatcttcaagaagtggacatgcatccagaagaaacgtaaattcatgttgatgatgaa-gataaatgtctttcaaatctagtgtt |
104 |
Q |
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| T |
820836 |
atattagatagttgaagatcttctagaactggacatgcgtctagaagcatcatcagttgacattgttggtcaaagataa-tgtctttcaaatgtagtgtt |
820738 |
T |
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| Q |
105 |
ttgagtgagggaaaattataacgagaattagcatccttaaaaaaccaaaaccaacggagtttgagaacaacaagggttgtacaa |
188 |
Q |
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| T |
820737 |
ttgagtgagggtaaattaagatgagaacaagcacccctagagaaacaaaaccaacggagcttgagaacaacaagggttgtacaa |
820654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 115
Target Start/End: Original strand, 975127 - 975229
Alignment:
| Q |
13 |
atagttgaagatcttcaagaagtggacatgcatccagaagaaacgtaaattcatgttgatgatgaagataaatgtctttcaaatctagtgttttgagtga |
112 |
Q |
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||||||||||||||||||||| ||||||| |||| ||||| | | |||| ||| |||| |||| || ||||| |||||||||| ||| ||||| ||||| |
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| T |
975127 |
atagttgaagatcttcaagaactggacatccatctagaagcatcataaaatcacgttgctgatcaaagtaaatctctttcaaatgtagggtttttagtga |
975226 |
T |
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| Q |
113 |
ggg |
115 |
Q |
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||| |
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| T |
975227 |
ggg |
975229 |
T |
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