View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18669_low_25 (Length: 250)
Name: NF18669_low_25
Description: NF18669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18669_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 16 - 246
Target Start/End: Original strand, 41920929 - 41921162
Alignment:
| Q |
16 |
atcaagcacagatcaatcaattgtagcaacccaaatggatcattgtttcccatactctgatttttggagcaattctacatcaacattatttactaaagaa |
115 |
Q |
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| T |
41920929 |
atcaaccacagatcaatcaattgtagcaacccaaatggatcattgtttcccatactctgattattggagcaattctacatcaacattatttactaaagaa |
41921028 |
T |
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| Q |
116 |
agtaaagaatgtgaacctatagttgagatgcccgcatcacctgaattgattgac---gatgaagagatttaccatgattatacttatgagagtgatgaag |
212 |
Q |
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| T |
41921029 |
agtaaagaatgtgaacctatagttgagatgcccgcatcacctgaattgattgacgatgatgaagagatttaccatgattatacttatgagagtgatgaag |
41921128 |
T |
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| Q |
213 |
aagatattgagagcgatgaagaaggtattgagag |
246 |
Q |
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| T |
41921129 |
aagatattgagagtgacgaagaagatattgagag |
41921162 |
T |
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Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 61 - 160
Target Start/End: Original strand, 1695039 - 1695138
Alignment:
| Q |
61 |
tttcccatactctgatttttggagcaattctacatcaacattatttactaaagaaagtaaagaatgtgaacctatagttgagatgcccgcatcacctgaa |
160 |
Q |
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| T |
1695039 |
tttcccatactttgattgttggagtaactctacatcaacattatttaccgaaaagagtaaagaatgtgaacctatagttgagatgcctgcatcacctgaa |
1695138 |
T |
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