View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18669_low_28 (Length: 238)
Name: NF18669_low_28
Description: NF18669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18669_low_28 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 38484966 - 38484761
Alignment:
| Q |
18 |
agaaaacacggccaacgaataaccctaacattccaagcattgtttggcagctccagcagctcaacctctttatcagaaatgatatcttcctctctaaagg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38484966 |
agaaaacacggccaacgaataaccctaacattccaagcattgtttggcagctccagcagctcaacctctttatcagaaatgatatcttcctctctaaagg |
38484867 |
T |
|
| Q |
118 |
acataattatctcgttccataacaaagcaaatttcttggcatcagcctggttagaatcgagcttcttaaaaggatgaccaagtccataccttagcttcat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38484866 |
acataattatctcgttccataacaaagcaaatttcttggcatcagcctggttagaatcgagcttcttaaaaggatgaccaagtccataccttagcttcat |
38484767 |
T |
|
| Q |
218 |
cctatg |
223 |
Q |
| |
|
|||||| |
|
|
| T |
38484766 |
cctatg |
38484761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 30119362 - 30119157
Alignment:
| Q |
18 |
agaaaacacggccaacgaataaccctaacattccaagcattgtttggcagctccagcagctcaacctctttatcagaaatgatatcttcctctctaaagg |
117 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||| || | ||||||||||||||||||||||||| | ||||| || ||||| ||||| ||||| | |
|
|
| T |
30119362 |
agaaaacatggccaacgaataacccgaacattccaagagttctgtggcagctccagcagctcaacctctctgtcagagataatatcctcctccctaaaag |
30119263 |
T |
|
| Q |
118 |
acataattatctcgttccataacaaagcaaatttcttggcatcagcctggttagaatcgagcttcttaaaaggatgaccaagtccataccttagcttcat |
217 |
Q |
| |
|
||| ||||||||||||||||| ||||||||| || ||||| ||| |||||||||| ||||||||| | | || ||||||| |||||||| ||||||| |
|
|
| T |
30119262 |
acaaaattatctcgttccatatcaaagcaaacttgttggcctcaacctggttagactcgagcttcctgtagggccgaccaagcccatacctgagcttcaa |
30119163 |
T |
|
| Q |
218 |
cctatg |
223 |
Q |
| |
|
|||||| |
|
|
| T |
30119162 |
cctatg |
30119157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University