View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18669_low_3 (Length: 614)
Name: NF18669_low_3
Description: NF18669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18669_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 284 - 488
Target Start/End: Original strand, 7885052 - 7885256
Alignment:
| Q |
284 |
aaaacgtacgttttatctcattgcagtttttataacaataattttcctattcttataggtggatatgacaccttggaagaactattagaagtgatcacct |
383 |
Q |
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| T |
7885052 |
aaaacgtacgttttatctcattgcagtttttataacaataattttcctattcttataggtggatatgacaccttggaagaactattagaagtgatcacct |
7885151 |
T |
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| Q |
384 |
cacctgggctcaactaggaattcatgataaacctgtaagcatatactctcaatagaagtgtaatggaatgtttaaaaagtatcttaaactaacatttgac |
483 |
Q |
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| T |
7885152 |
cacctgggctcaactaggaattcatgataaacctgtaagcatatactctcaatagaagtgtaatggaatgtttaaaaagtatcttaaagtaacatttgac |
7885251 |
T |
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| Q |
484 |
atgtt |
488 |
Q |
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||||| |
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| T |
7885252 |
atgtt |
7885256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 483 - 600
Target Start/End: Original strand, 7885284 - 7885408
Alignment:
| Q |
483 |
catgttctctacactttttgtgtgtgagtttcgccactagattctttaacattaaaaaatcttaataaatgcaaaaatggattaattgc-------attg |
575 |
Q |
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| T |
7885284 |
catgttctctacactttgtgtgtgtgagtttcgccactagattctttaacattaaaaaatcttaataaatgaaaaaatggattgattgcattatatattg |
7885383 |
T |
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| Q |
576 |
caggtgggattgttgaatgtggatg |
600 |
Q |
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| T |
7885384 |
caggtgggattgttgaatgtggatg |
7885408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 209 - 287
Target Start/End: Original strand, 7884814 - 7884892
Alignment:
| Q |
209 |
gctctacaagccgatgcttttattgccttgctaggttacttttttctcttcgtagctctaacatggtaactcaagaaaa |
287 |
Q |
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| T |
7884814 |
gctcgacaggccgatgcttttattgccttgccaggttacttttttctcttcgtagctctaacatggtaactcaagaaaa |
7884892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 89 - 135
Target Start/End: Original strand, 7884694 - 7884740
Alignment:
| Q |
89 |
tttatttatatcttcttttactaaatagtaaatactaatattacgag |
135 |
Q |
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| T |
7884694 |
tttatttatatcttgtgttacataatagtaaatactaatattacgag |
7884740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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