View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18669_low_30 (Length: 236)
Name: NF18669_low_30
Description: NF18669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18669_low_30 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 39943623 - 39943403
Alignment:
| Q |
1 |
tttcaatccaattaactatgttttacgatgatatccaatgagaaactactatttttccatatcaatttcaaaatatacttacaaaagtggagtatttgtc |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
39943623 |
tttcaatctaattaactatgttttacgatgatatccaatgagaaactactatttttccatatcaatttcaaattatacttacaaaagtggagtatttgtc |
39943524 |
T |
|
| Q |
101 |
aaaatagtagattttcgcctacaatttaaataaagaaaaaattgaaatgtagaaagacaacataccctgtaaccttgaagaccatgtaagctgctttctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39943523 |
aaaatagtagattttcgcctacaatttaaataaataaaaaattgaaatgtagaaagacaacataccctgtaaccttgaagaccatgtaagctgctttctt |
39943424 |
T |
|
| Q |
201 |
tgagatccgcagggaaccaat |
221 |
Q |
| |
|
||||||| ||||||||||||| |
|
|
| T |
39943423 |
tgagatcggcagggaaccaat |
39943403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 2 - 221
Target Start/End: Original strand, 28739326 - 28739545
Alignment:
| Q |
2 |
ttcaatccaattaactatgttttacgatgatatccaatgagaaactactatttttccatatcaatttcaaaatatacttacaaaagtggagtatttgtca |
101 |
Q |
| |
|
|||||||||||||||| | ||| | | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||| |
|
|
| T |
28739326 |
ttcaatccaattaactgtatttaaagttgatatccaataagaaactactatttttccatatcaatttcaaaatatacttacaaaaatggagtatgtatca |
28739425 |
T |
|
| Q |
102 |
aaatagtagattttcgcctacaatttaaataaagaaaaaattgaaatgtagaaagacaacataccctgtaaccttgaagaccatgtaagctgctttcttt |
201 |
Q |
| |
|
||| ||||||||| ||| |||||||||||||| ||||||| ||||| ||||||||||| ||| |||||||||||||||||||||||||| |||| || |
|
|
| T |
28739426 |
aaaatgtagatttttgccaacaatttaaataaataaaaaatagaaatacagaaagacaacttactttgtaaccttgaagaccatgtaagctgttttcatt |
28739525 |
T |
|
| Q |
202 |
gagatccgcagggaaccaat |
221 |
Q |
| |
|
||| || |||| |||||||| |
|
|
| T |
28739526 |
gagctcagcagagaaccaat |
28739545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 28749266 - 28749487
Alignment:
| Q |
1 |
tttcaatccaattaactatgttttacgatgatatccaatgagaaactactatttttccatatcaatttcaaaatatacttac-aaaagtggagtatttgt |
99 |
Q |
| |
|
||||||||||| ||||| | ||||| | ||||||||| ||||||||||||||||||| ||| ||||| |||| ||||||||| |||||||||||| |||| |
|
|
| T |
28749266 |
tttcaatccaagtaactgtcttttaagttgatatccattgagaaactactatttttctataccaattccaaagtatacttacaaaaagtggagta-ttgt |
28749364 |
T |
|
| Q |
100 |
caaaatagtagattttcgcctacaatttaaataaagaaaaaattgaaatgtagaaagac-aacataccctgtaaccttgaagaccatgtaagctgctttc |
198 |
Q |
| |
|
||||| |||| ||||||||||||| ||||||||| | ||||| ||||| |||||||| ||| ||| |||||||||||||||||||||||||||| | |
|
|
| T |
28749365 |
caaaaatgtaggttttcgcctacaagttaaataaatagaaaatcgaaatcaagaaagacaaacttactttgtaaccttgaagaccatgtaagctgctatg |
28749464 |
T |
|
| Q |
199 |
tttgagatccgcagggaaccaat |
221 |
Q |
| |
|
||||||||| | ||||||||||| |
|
|
| T |
28749465 |
tttgagatcagaagggaaccaat |
28749487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 28753279 - 28753500
Alignment:
| Q |
1 |
tttcaatccaattaactatgttttacgatgatatccaatgagaaactactatttttccatatcaatttcaaaatatacttac-aaaagtggagtatttgt |
99 |
Q |
| |
|
||||||||||| ||||| | ||||| | ||||||||| ||||||||||||||||||| ||| ||||| |||| ||||||||| |||||||||||| |||| |
|
|
| T |
28753279 |
tttcaatccaagtaactgtcttttaagttgatatccattgagaaactactatttttctataccaattccaaagtatacttacaaaaagtggagta-ttgt |
28753377 |
T |
|
| Q |
100 |
caaaatagtagattttcgcctacaatttaaataaagaaaaaattgaaatgtagaaagac-aacataccctgtaaccttgaagaccatgtaagctgctttc |
198 |
Q |
| |
|
||||| |||| ||||||||||||| ||||||||| | ||||| ||||| |||||||| ||| ||| |||||||||||||||||||||||||||| | |
|
|
| T |
28753378 |
caaaaatgtaggttttcgcctacaagttaaataaatagaaaatcgaaatcaagaaagacaaacttactttgtaaccttgaagaccatgtaagctgctatg |
28753477 |
T |
|
| Q |
199 |
tttgagatccgcagggaaccaat |
221 |
Q |
| |
|
||||||||| | ||||||||||| |
|
|
| T |
28753478 |
tttgagatcagaagggaaccaat |
28753500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University