View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18669_low_5 (Length: 523)
Name: NF18669_low_5
Description: NF18669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18669_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 95 - 505
Target Start/End: Original strand, 33593288 - 33593698
Alignment:
| Q |
95 |
aaaacaagcaagagggaaactccaaatcatttccctttcatgttttgcaaaacaacgaaaaataaagtcaagcacaactggtttttctcataaatgttgg |
194 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33593288 |
aaaacaaacaagagggaaactccaaatcatttccctttcatgttttgcaaaacaacgaaaaataaagtcaagcacaactggtttttctcataaatgttgg |
33593387 |
T |
|
| Q |
195 |
ggagtgggggatgatgggcctgactaattaatgcacacgaattatgtgaaataagtgacagagtgagcacacnnnnnnnnnnnngtcctaccgcatagtc |
294 |
Q |
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||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33593388 |
ggagtaggggatgatgggcctgactaattaatgcacaccaattatgtgaaataagtgacagagtgagcacacaaaaagaaaaaagtcctaccgcatagtc |
33593487 |
T |
|
| Q |
295 |
aacgcttcaaagtatatacttgtattgaccacaaagtgccacgattctttttcttttctaaccaccaatctttgatgtttttgttgaaatagtttggtga |
394 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
33593488 |
aacgcttcaaagtatatagttgtattgaccacaaagtgccacgattctttttcttttctaaccaccaatctttgatgattttgttgaaatggtttggtga |
33593587 |
T |
|
| Q |
395 |
tgaattggtgatattccgttaagaagatcagattggattggacagcaaaggcttactcgtgcctaacattttaacaatatcaatctattagcttatcgta |
494 |
Q |
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||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
33593588 |
tgaattggtgatattacgttaagaatatcagattggattggacatcaaaggcttactcgtgcctaacattttagcaatatcaatctattagcttatcgta |
33593687 |
T |
|
| Q |
495 |
acgtgtaaagt |
505 |
Q |
| |
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||||||||||| |
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| T |
33593688 |
acgtgtaaagt |
33593698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 95 - 505
Target Start/End: Original strand, 33600419 - 33600829
Alignment:
| Q |
95 |
aaaacaagcaagagggaaactccaaatcatttccctttcatgttttgcaaaacaacgaaaaataaagtcaagcacaactggtttttctcataaatgttgg |
194 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33600419 |
aaaacaaacaagagggaaactccaaatcatttccctttcatgttttgcaaaacaacgaaaaataaagtcaagcacaactggtttttctcataaatgttgg |
33600518 |
T |
|
| Q |
195 |
ggagtgggggatgatgggcctgactaattaatgcacacgaattatgtgaaataagtgacagagtgagcacacnnnnnnnnnnnngtcctaccgcatagtc |
294 |
Q |
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| T |
33600519 |
ggagtaggggatgatgggcctgactaattaatgcacaccaattatgtgaaataagtgacagagtgagcacacaaaaagaaaaaagtcctaccgcatagtc |
33600618 |
T |
|
| Q |
295 |
aacgcttcaaagtatatacttgtattgaccacaaagtgccacgattctttttcttttctaaccaccaatctttgatgtttttgttgaaatagtttggtga |
394 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
33600619 |
aacgcttcaaagtatatagttgtattgaccacaaagtgccacgattctttttcttttctaaccaccaatctttgatgattttgttgaaatggtttggtga |
33600718 |
T |
|
| Q |
395 |
tgaattggtgatattccgttaagaagatcagattggattggacagcaaaggcttactcgtgcctaacattttaacaatatcaatctattagcttatcgta |
494 |
Q |
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||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
33600719 |
tgaattggtgatattacgttaagaatatcagattggattggacatcaaaggcttactcgtgcctaacattttagcaatatcaatctattagcttatcgta |
33600818 |
T |
|
| Q |
495 |
acgtgtaaagt |
505 |
Q |
| |
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||||||||||| |
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| T |
33600819 |
acgtgtaaagt |
33600829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 33 - 266
Target Start/End: Original strand, 33585975 - 33586192
Alignment:
| Q |
33 |
tttgctttggaaatctcgcagacctgcgtctatggttgcaaactccaaaccaatcagacacgaaaacaagcaagagggaaactccaaatcatttcccttt |
132 |
Q |
| |
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||||||||||||||| |||||| ||| | | |||||||||| |||||| ||| ||| ||| ||||||| ||||||||| | |||||||||| | |
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| T |
33585975 |
tttgctttggaaatcctgcagacatgcatttgtggttgcaaattccaaatcaaacaggcactaaaacaaacaagagggagctt-----tcatttccctgt |
33586069 |
T |
|
| Q |
133 |
catgttttgcaaaacaacgaaaaataaagtcaagcacaactggtttttctcataaatgttggggagtgggggatgatgggcctgactaattaatgcacac |
232 |
Q |
| |
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||||||||||||||||||||||||||| | ||||| |||||||||||||| |||||||||||||||| |||||||||||||||||| |
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| T |
33586070 |
catgttttgcaaaacaacgaaaaataatttt------------tttttttcataaatgttgggaggtgggggatgatgggcttgactaattaatgcacac |
33586157 |
T |
|
| Q |
233 |
gaattatgtgaa-ataagtgacagagtgagcacac |
266 |
Q |
| |
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||||||||||| || ||||||||||||||||||| |
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| T |
33586158 |
caattatgtgaatatgagtgacagagtgagcacac |
33586192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 33593233 - 33593290
Alignment:
| Q |
17 |
taaaaattaaggcaaatttgctttggaaatctcgcagacctgcgtctatggttgcaaa |
74 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||| |
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|
| T |
33593233 |
taaaaattaagtcaaatttgctttggaaatctcgcagacctgcgtttgtggttgcaaa |
33593290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 33600364 - 33600421
Alignment:
| Q |
17 |
taaaaattaaggcaaatttgctttggaaatctcgcagacctgcgtctatggttgcaaa |
74 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
33600364 |
taaaaattaagtcaaatttgctttggaaatctcgcagacctgcgtttgtggttgcaaa |
33600421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 455 - 505
Target Start/End: Original strand, 33586260 - 33586311
Alignment:
| Q |
455 |
gcctaacattttaacaatatcaatctattagcttatc-gtaacgtgtaaagt |
505 |
Q |
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||||||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
33586260 |
gcctaacattttaacaatatcaatctattagcttaacggtaacgtgtaaagt |
33586311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 388
Target Start/End: Original strand, 33586214 - 33586258
Alignment:
| Q |
344 |
tttcttttctaaccaccaatctttgatgtttttgttgaaatagtt |
388 |
Q |
| |
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||||||||||||| | ||||||||||||||||||||| ||||||| |
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| T |
33586214 |
tttcttttctaactaacaatctttgatgtttttgttgtaatagtt |
33586258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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