View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18669_low_6 (Length: 501)

Name: NF18669_low_6
Description: NF18669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18669_low_6
NF18669_low_6
[»] chr1 (4 HSPs)
chr1 (19-482)||(27992994-27993455)
chr1 (236-479)||(28001927-28002166)
chr1 (236-479)||(27992110-27992343)
chr1 (253-310)||(28002905-28002962)
[»] chr5 (1 HSPs)
chr5 (381-479)||(39376978-39377075)


Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 19 - 482
Target Start/End: Complemental strand, 27993455 - 27992994
Alignment:
Q  19 gttacagataagaggttctcaccatcgaattagcaatggcggatcttcgttgtaaagtttgtgaggcacttaaggtgagttatcatcatcctacnnnnnn 118  Q
    |||||||||||||||||||||||||||  ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||          
T  27993455 gttacagataagaggttctcaccatcgctttagcaatgacggattttcgttgtaaagtttgtgaggcacttaaggtgagttatcatcatcctactttttt 27993356  T
Q  119 nnn--catacgcaattgtcatagattatatctatgatcacttgtttaaaaggcttaaatctcttacaacttgaatcaattcattgtttcttatgccacat 216  Q
         ||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  27993355 tttttcatacacaattgtcagagattatatccatgatcacttgtttaaaaggcttaaatctcttacaacttggatcaattcattgtttcttttgccacat 27993256  T
Q  217 atgctctaccacttaacataaaattaatcacactccatggtaacaatcaaagtgaatcattccaagctcaattcgttatctctttatgaaaataactagt 316  Q
    |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27993255 atgctctaccacttaacataaaattaatcatactccatggttacaatcaaagtgaatcattccaagctcaattcgttatctctttatgaaaataactagt 27993156  T
Q  317 tttagagtgttctttatgaaaacaaacgaacatatataaatcaagtttttatgatataagaagacataaacatgcaagcaccaaaagaattttattttac 416  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||    
T  27993155 tttagagtgttctttatgaaaacaaacgaacatatataaatcaagtttttatgatat---aagacataaacatgcaagcaccaaaagaattttattttac 27993059  T
Q  417 aaattataagatattatccttcaacggattgtgttcatttcttatcaatgaataaagatccatgcc 482  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  27993058 aaattataagatattatccttcaacggattgtgttca-ttcttatcaatgaataaagatccatgcc 27992994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 236 - 479
Target Start/End: Original strand, 28001927 - 28002166
Alignment:
Q  236 aaaattaatcacactccatggtaacaatcaaagtgaatcattccaagctcaattcgttatctctttatgaaaataactagttttagagtgttctttatga 335  Q
    |||||| | |||||||||  || |||||||||||||| ||  |||| |||||||||||||||||| |||||||||||| ||||||||| | |||||||||    
T  28001927 aaaattcaacacactccacagtgacaatcaaagtgaaccaagccaatctcaattcgttatctcttcatgaaaataactggttttagagcgctctttatga 28002026  T
Q  336 aaacaaacgaacatatataaatcaagtttttatgatataagaagacataaacatgcaagcaccaaaagaattttattttacaaattataagatattatcc 435  Q
     | |||   || ||| |||||||||| ||||||||| ||||     |||||||| |||||||||||| ||||||||||| |||||||||||| ||||||     
T  28002027 catcaattcaatataaataaatcaagattttatgatctaaggt---ataaacatacaagcaccaaaataattttatttttcaaattataagacattatca 28002123  T
Q  436 ttcaacggattgtgttcatttcttatcaatgaataaagatccat 479  Q
    ||||| |||||||||||| |||||||||||||||||||||||||    
T  28002124 ttcaaaggattgtgttca-ttcttatcaatgaataaagatccat 28002166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 236 - 479
Target Start/End: Original strand, 27992110 - 27992343
Alignment:
Q  236 aaaattaatcacactccatggtaacaatcaaagtgaatcattccaagctcaattcgttatctctttatgaaaataactagttttagagtgttctttatga 335  Q
    |||||| | |||||||| | || |||||||||||||| |  |||||||||||||| ||||||||| ||||| |||| | ||||||||||      |||||    
T  27992110 aaaattcaacacactccgtagtgacaatcaaagtgaaccgatccaagctcaattcattatctcttaatgaacataaatggttttagagt------tatga 27992203  T
Q  336 aaacaaacgaacatatataaatcaagtttttatgatataagaagacataaacatgcaagcaccaaaagaattttattttacaaattataagatattatcc 435  Q
    || |||   |||| |||| ||||||||||||||||||||||     |||||||| |||||||||||| || | |||||| |||||||||| | |||||||    
T  27992204 aatcaattcaacagatatgaatcaagtttttatgatataaggt---ataaacatacaagcaccaaaaaaaatatatttttcaaattataatacattatcc 27992300  T
Q  436 ttcaacggattgtgttcatttcttatcaatgaataaagatccat 479  Q
     |||| |||||||| ||| |||||||||||||||||||||||||    
T  27992301 atcaaaggattgtgctca-ttcttatcaatgaataaagatccat 27992343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 253 - 310
Target Start/End: Complemental strand, 28002962 - 28002905
Alignment:
Q  253 atggtaacaatcaaagtgaatcattccaagctcaattcgttatctctttatgaaaata 310  Q
    |||||||||||||||||||| || |||||| ||||||||||||||||| |||||||||    
T  28002962 atggtaacaatcaaagtgaaccaatccaagttcaattcgttatctcttcatgaaaata 28002905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 381 - 479
Target Start/End: Complemental strand, 39377075 - 39376978
Alignment:
Q  381 cataaacatgcaagcaccaaaagaattttattttacaaattataagatattatccttcaacggattgtgttcatttcttatcaatgaataaagatccat 479  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||| |||||||    
T  39377075 cataaacatacaagcaccaaaagaattttattttgcaaattataagatatcatccttcaaaggattgtgttca-ttcttatcaatgaataatgatccat 39376978  T

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