View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1866_high_4 (Length: 394)
Name: NF1866_high_4
Description: NF1866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1866_high_4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 7 - 394
Target Start/End: Complemental strand, 55493761 - 55493374
Alignment:
| Q |
7 |
gaaattgcaaagctgttcccgaatctgttcgggcaatcgtctgcgatgctggtgccgggtggttcggagacggtgcagattaatcagaagctgaagattg |
106 |
Q |
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| T |
55493761 |
gaaattgcaaagctgttcccgaatctgttcgggcaatcgtctgcgatgctggtgccgggtggttcggagacggtgcagcttaatcagaagctgaagattg |
55493662 |
T |
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| Q |
107 |
gtgtggttttgtccggtgggcaagctcctggtggtcacaatgtgatttcgggaattttcggtaagatatgatagttttcaattcaacagaatcaatattt |
206 |
Q |
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| T |
55493661 |
gtgtggttttgtccggtgggcaagctcctggtggtcacaatgtgatttcgggaattttcggtaagatatgatagttttcaattcaatagaatcaatattt |
55493562 |
T |
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| Q |
207 |
gtagaaatattcaatttttaatttgtaaatttgattttggttatagattatttacaagatagagcaaaaggaagcacattgtatggtttcaggggtggtc |
306 |
Q |
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| T |
55493561 |
gtagaaatattcaatttttaatttgtaaatttgattttggttatagattatttacaagatagagcaaaaggaagcacattgtatggtttcaggggtggtc |
55493462 |
T |
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| Q |
307 |
cggcaggtatcacgaagtgcaaatacgttgagctcacctcagattatatttatccttatagaaatcaggtttatattcttagttacat |
394 |
Q |
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| T |
55493461 |
cggcaggtatcatgaagtgcaaatacgttgagctcacctcagattatatttatccttatagaaatcaggtttatattcttagttacat |
55493374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 276 - 376
Target Start/End: Complemental strand, 8870655 - 8870555
Alignment:
| Q |
276 |
ggaagcacattgtatggtttcaggggtggtccggcaggtatcacgaagtgcaaatacgttgagctcacctcagattatatttatccttatagaaatcagg |
375 |
Q |
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| T |
8870655 |
ggaagcacattgtatggtttcaaaggtggtcctgctgggattatgaagggcaaatatgttgaacttaactctgattatatttatccttacagaaatcagg |
8870556 |
T |
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| Q |
376 |
t |
376 |
Q |
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| T |
8870555 |
t |
8870555 |
T |
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