View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1866_low_13 (Length: 247)
Name: NF1866_low_13
Description: NF1866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1866_low_13 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 13 - 247
Target Start/End: Original strand, 54656784 - 54657013
Alignment:
| Q |
13 |
aaaaaaatcatatacatttaaagtttaaatnnnnnnnnnnntcggacatgaagatgattatatatttttagttgactataatgattgcgtcnnnnnnnga |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
54656784 |
aaaaaaatcatatacatttaaagtttaaataaaaaaaaaaatgggacatgaagatgattatatatttttagttgactataatgattgcgtcaaaaaaaga |
54656883 |
T |
|
| Q |
113 |
agagactatatatgaagacgagcaaacagttcacttgaaatgcattactgtatttcacatggtggcatctcaatccagtccaaatgcacattccattaca |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54656884 |
agagactatatatgaagacgagcaaacagttcacttgaaatgcatta-----tttcacatggtggcatctcaatccagtccaaatgcacattccattaca |
54656978 |
T |
|
| Q |
213 |
tgctaaatgtattaattattccaaaatttgtagtt |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
54656979 |
tgctaaatgtattaattattccaaaatttgtagtt |
54657013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University