View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1866_low_16 (Length: 245)

Name: NF1866_low_16
Description: NF1866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1866_low_16
NF1866_low_16
[»] chr2 (1 HSPs)
chr2 (13-227)||(7261195-7261409)
[»] chr4 (2 HSPs)
chr4 (195-227)||(53363693-53363725)
chr4 (195-227)||(52198386-52198418)
[»] chr1 (4 HSPs)
chr1 (162-226)||(7536971-7537035)
chr1 (196-227)||(40717637-40717668)
chr1 (179-225)||(45487244-45487290)
chr1 (195-223)||(26056832-26056860)
[»] chr5 (2 HSPs)
chr5 (156-226)||(12992943-12993013)
chr5 (156-226)||(13067593-13067663)
[»] chr8 (1 HSPs)
chr8 (195-223)||(20224925-20224953)
[»] chr7 (1 HSPs)
chr7 (195-223)||(44309437-44309465)


Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 13 - 227
Target Start/End: Complemental strand, 7261409 - 7261195
Alignment:
Q  13 aatataaatttagtaaataaaaattgcaattattctgaatatataatttaattagaagttgtgtttaactcatttcagggtacgaagcaccaatgctaag 112  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7261409 aatataaatttagtaaataaaaattgcagttattctgaatatataatttaattagaagttgtgtttaactcatttcagggtacgaagcaccaatgctaag 7261310  T
Q  113 gtaaataattttttcaccattgtagctcctttgaaaaatgttagatgattttgagttttggggacgttaatatatttaattcatagataaataattaaaa 212  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  7261309 gtaaataatttattcaccattgtagctcctttgaaaaatgttagatgattttgagttttggggacgttaatatatttaattgatagataaataattaaaa 7261210  T
Q  213 taaattattttgatg 227  Q
    |||||||||||||||    
T  7261209 taaattattttgatg 7261195  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 227
Target Start/End: Original strand, 53363693 - 53363725
Alignment:
Q  195 atagataaataattaaaataaattattttgatg 227  Q
    |||||||||||||||||||||||||||||||||    
T  53363693 atagataaataattaaaataaattattttgatg 53363725  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 227
Target Start/End: Complemental strand, 52198418 - 52198386
Alignment:
Q  195 atagataaataattaaaataaattattttgatg 227  Q
    |||||||||| ||||||||||||||||||||||    
T  52198418 atagataaatgattaaaataaattattttgatg 52198386  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 226
Target Start/End: Original strand, 7536971 - 7537035
Alignment:
Q  162 tttgagttttggggacgttaatatatttaattcatagataaataattaaaataaattattttgat 226  Q
    |||||||||||| ||  ||||| ||||| ||| ||| |||||| |||||||||||||||||||||    
T  7536971 tttgagttttggtgagtttaatgtatttgattgatatataaatgattaaaataaattattttgat 7537035  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 227
Target Start/End: Complemental strand, 40717668 - 40717637
Alignment:
Q  196 tagataaataattaaaataaattattttgatg 227  Q
    ||||||||||||||||||||||||||||||||    
T  40717668 tagataaataattaaaataaattattttgatg 40717637  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 45487244 - 45487290
Alignment:
Q  179 ttaatatatttaattcatagataaataattaaaataaattattttga 225  Q
    ||||| ||||||||| ||||||||| ||||||||||| |||||||||    
T  45487244 ttaatgtatttaattaatagataaacaattaaaataagttattttga 45487290  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 223
Target Start/End: Complemental strand, 26056860 - 26056832
Alignment:
Q  195 atagataaataattaaaataaattatttt 223  Q
    |||||||||||||||||||||||||||||    
T  26056860 atagataaataattaaaataaattatttt 26056832  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 226
Target Start/End: Complemental strand, 12993013 - 12992943
Alignment:
Q  156 gatgattttgagttttggggacgttaatatatttaattcatagataaataattaaaataaattattttgat 226  Q
    |||||||||||||||| | ||| ||| ||||| ||||| |||||| ||| |||| || |||||||||||||    
T  12993013 gatgattttgagtttttgtgactttagtatatctaattgatagattaatgattagaacaaattattttgat 12992943  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 226
Target Start/End: Complemental strand, 13067663 - 13067593
Alignment:
Q  156 gatgattttgagttttggggacgttaatatatttaattcatagataaataattaaaataaattattttgat 226  Q
    |||||||||||||||| | ||| ||| ||||| ||||| |||||| ||| |||| || |||||||||||||    
T  13067663 gatgattttgagtttttgtgactttagtatatctaattgatagattaatgattagaacaaattattttgat 13067593  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 223
Target Start/End: Original strand, 20224925 - 20224953
Alignment:
Q  195 atagataaataattaaaataaattatttt 223  Q
    |||||||||||||||||||||||||||||    
T  20224925 atagataaataattaaaataaattatttt 20224953  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 223
Target Start/End: Original strand, 44309437 - 44309465
Alignment:
Q  195 atagataaataattaaaataaattatttt 223  Q
    |||||||||||||||||||||||||||||    
T  44309437 atagataaataattaaaataaattatttt 44309465  T

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