View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1866_low_2 (Length: 475)
Name: NF1866_low_2
Description: NF1866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1866_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 443; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 1 - 463
Target Start/End: Original strand, 54657198 - 54657660
Alignment:
| Q |
1 |
ttatgcagtaattaaaattagtttgatagaatcgagttaaaaagaactgattttgaataaaagtgaattgaactaaagtaaatttatgtttagatacatt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
54657198 |
ttatgcagtaattaaaattagtttgatagaatcgagttaaaaagaactgattttgaataaaagtgaatagaactaaagtaaatttatgtttagatacatt |
54657297 |
T |
|
| Q |
101 |
cacataaaattggtttttatcgcaggagcaagatcaagaccgatctcttgctgccataattctttggagtttgtggaagagtagtaataccaagctttgg |
200 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54657298 |
cacataaaattggtttttatcacaggagcaagatcaagaccgatctcttgctgccataattctttggagtttgtggaagagtagtaataccaagctttgg |
54657397 |
T |
|
| Q |
201 |
gaggctacaaacacttcactgaccctcattgtctcttgtgcttatgatgtgctacacgaatggagctgcatgcaacgagctaagcatccggcaagccccc |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54657398 |
gaggctacaaacacttcactgaccctcattgtctcttgtgcttatgatgtgctacacgaatggagctgcatgcaacgagctaagcatccggcaagccccc |
54657497 |
T |
|
| Q |
301 |
aagatcagcaacggacgtggaccaagccacagcccggccacatcaaatgcaatgttgacacgaccaatttccataataactctattatggcttatggttt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54657498 |
aagatcagcaacggacgtggaccaagccacaggccggccacatcaaatgcaatgttgacacgaccaatttccataataactctattatggcttatggttt |
54657597 |
T |
|
| Q |
401 |
atgctttagagactcaacatgatctctattattaattaaatccgactacttgcacttatcttc |
463 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
54657598 |
atgctttagagactcaacatgatctctattattaattaaatctaactacttgcacttatcttc |
54657660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 138 - 467
Target Start/End: Original strand, 43733389 - 43733718
Alignment:
| Q |
138 |
gaccgatctcttgctgccataattctttggagtttgtggaagagtagtaataccaagctttgggaggctacaaacacttcactgaccctcattgtctctt |
237 |
Q |
| |
|
|||||| |||| |||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| | | | | ||||||| |
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|
| T |
43733389 |
gaccgacctctggctgccatgattctttggagtttgtggaagagtcgttataccaagctttgggaggctacaaacacttcacccatctttaatgtctctc |
43733488 |
T |
|
| Q |
238 |
gtgcttatgatgtgctacacgaatggagctgcatgcaacgagctaagcatccggcaagcccccaagatcagcaacggacgtggaccaagccacagcccgg |
337 |
Q |
| |
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||||||||||||||| |||||||||||||||||| ||||||||||| ||| ||||||||||||||||| ||| ||||||||||||||| ||||||| |
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|
| T |
43733489 |
atgcttatgatgtgctccacgaatggagctgcatgtaacgagctaagtatcatgcaagcccccaagatcatcaattgacgtggaccaagccgcagcccga |
43733588 |
T |
|
| Q |
338 |
ccacatcaaatgcaatgttgacacgaccaatttccataataactctattatggcttatggtttatgctttagagactcaacatgatctctattattaatt |
437 |
Q |
| |
|
||| ||||||||||||||||||||| ||||||| ||||||||| ||||| ||||| | ||||||||||||||||||||| ||||||||||||||| | |
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|
| T |
43733589 |
ccatatcaaatgcaatgttgacacggtcaatttcaataataactttattactgcttacgatttatgctttagagactcaacgtgatctctattattaggt |
43733688 |
T |
|
| Q |
438 |
aaatccgactacttgcacttatcttcatct |
467 |
Q |
| |
|
||||||||||||||| |||||||||||||| |
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|
| T |
43733689 |
aaatccgactacttgaacttatcttcatct |
43733718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 167; Significance: 3e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 135 - 467
Target Start/End: Complemental strand, 28570860 - 28570534
Alignment:
| Q |
135 |
caagaccgatctcttgctgccataattctttggagtttgtggaagagtagtaataccaagctttgggaggctacaaacacttcactgaccctcattgtct |
234 |
Q |
| |
|
||||||||| |||| ||| |||| |||||||||||| | | ||||||| |||||||||||||||||||||||| |||||||| || ||| ||||||||| |
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|
| T |
28570860 |
caagaccgacctctggctaccatgattctttggagtctctagaagagtcgtaataccaagctttgggaggctagaaacacttgacccaccttcattgtct |
28570761 |
T |
|
| Q |
235 |
cttgtgcttatgatgtgctacacgaatggagctgcatgcaacgagctaagcatccggcaagcccccaagatcagcaacggacgtggaccaagccacagcc |
334 |
Q |
| |
|
||| |||| ||||||||||||||||||||||||||||||||||||||||| | |||||| ||| ||||||||||| || |||||||||||| || || |
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|
| T |
28570760 |
cttatgctcatgatgtgctacacgaatggagctgcatgcaacgagctaag---cgggcaag-ccctaagatcagcaatcgatgtggaccaagccgcaacc |
28570665 |
T |
|
| Q |
335 |
cggccacatcaaatgcaatgttgacacgaccaatttccataataactctattatggcttatggtttatgctttagagactcaacatgatctctattatta |
434 |
Q |
| |
|
|| |||||||||||||||||||||| | |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
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| T |
28570664 |
cgaccacatcaaatgcaatgttgacgcatccaatttcaataataactctattatggcttacagtttatgctttagagactcaacatgatctctatt-tta |
28570566 |
T |
|
| Q |
435 |
attaaatccgactacttgcacttatcttcatct |
467 |
Q |
| |
|
|||| | |||||||||||||||||||||||| |
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|
| T |
28570565 |
ggtaaa-ctgactacttgcacttatcttcatct |
28570534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 364 - 467
Target Start/End: Complemental strand, 29928810 - 29928707
Alignment:
| Q |
364 |
ccaatttccataataactctattatggcttatggtttatgctttagagactcaacatgatctctattattaattaaatccgactacttgcacttatcttc |
463 |
Q |
| |
|
|||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||| |
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| T |
29928810 |
ccaatttcaataataactttattatggcttacaatttatgctttagagactcaacatgatctctgttatttgataaatgtgactacttgcacttatcttt |
29928711 |
T |
|
| Q |
464 |
atct |
467 |
Q |
| |
|
|||| |
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|
| T |
29928710 |
atct |
29928707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 150 - 312
Target Start/End: Complemental strand, 29928997 - 29928835
Alignment:
| Q |
150 |
gctgccataattctttggagtttgtggaagagtagtaataccaagctttgggaggctacaaacacttcactgaccctcattgtctcttgtgcttatgatg |
249 |
Q |
| |
|
|||||||| |||||||| ||||| |||||| || |||| || ||||||||| | |||| ||||||||| ||| ||||||||||| |||| |||||| |
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| T |
29928997 |
gctgccatgattctttgaagtttatggaagtgtcgtaacacgaagctttggaaagctagtgacacttcacccaccttcattgtctctcatgctcatgatg |
29928898 |
T |
|
| Q |
250 |
tgctacacgaatggagctgcatgcaacgagctaagcatccggcaagcccccaagatcagcaac |
312 |
Q |
| |
|
|| |||| ||||||| |||||||||| |||||| |||| | |||||||||||||||| |||| |
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|
| T |
29928897 |
tgttacatgaatggatttgcatgcaacaagctaaacatctgacaagcccccaagatcaacaac |
29928835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 8041398 - 8041347
Alignment:
| Q |
21 |
gtttgatagaatcgagttaaaaagaactgattttgaataaaagtgaattgaa |
72 |
Q |
| |
|
|||||||||||| ||||| | |||| ||||||||||||||||||||||||| |
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|
| T |
8041398 |
gtttgatagaattgagtttgagagaattgattttgaataaaagtgaattgaa |
8041347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 303
Target Start/End: Complemental strand, 42703227 - 42703168
Alignment:
| Q |
244 |
atgatgtgctacacgaatggagctgcatgcaacgagctaagcatccggcaagcccccaag |
303 |
Q |
| |
|
||||||||||| |||||||||| | ||||||| ||||||| |||||||| ||||||||| |
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|
| T |
42703227 |
atgatgtgctatacgaatggagtttcatgcaaagagctaaacatccggcgtgcccccaag |
42703168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 375 - 415
Target Start/End: Complemental strand, 34763053 - 34763013
Alignment:
| Q |
375 |
aataactctattatggcttatggtttatgctttagagactc |
415 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||| |
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|
| T |
34763053 |
aataactctatcatgggctatggtttatgctttagagactc |
34763013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 375 - 415
Target Start/End: Original strand, 34763794 - 34763834
Alignment:
| Q |
375 |
aataactctattatggcttatggtttatgctttagagactc |
415 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||| |
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|
| T |
34763794 |
aataactctatcatgggctatggtttatgctttagagactc |
34763834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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