View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1866_low_3 (Length: 412)
Name: NF1866_low_3
Description: NF1866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1866_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 56 - 383
Target Start/End: Original strand, 22718873 - 22719200
Alignment:
| Q |
56 |
aaacctcgtataattaaacctcctatacaaccacctataccggtcccaagcgcgccgcatatacaccctccaaggccatctcgaccacctcccaagatgt |
155 |
Q |
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| T |
22718873 |
aaacctcgtataattaaacctcctatacaaccacctataccggtcccaagcgcgccgcatatacaccctccaaggccatctcgaccacctcccaagatgt |
22718972 |
T |
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| Q |
156 |
aagaattcagaacgcacagcagcaaacaagcgtatattgttatattccaatcttaatcctgtttttatgtttggatggtcattttttcctttattgtggt |
255 |
Q |
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| T |
22718973 |
aagaattcagaacgcacagcagcaaacaagcgtatattgttatattccaatcttaatcctgtttttatgtttggatggtcattttttcctttattgtggt |
22719072 |
T |
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| Q |
256 |
ttagccttgtttcttgtagttttgcatttgtttaaaataaatatatccagcagcaaattaagggtaatatattatgtatcgttgaaatattttacacttg |
355 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
22719073 |
ttagccttgtttcttgtggttttgcatttgtttaaaataaatatatccagcagcaaattaagggtaatatattatgcatcgttgaaatattttacacttg |
22719172 |
T |
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| Q |
356 |
tttgttgtatcattagcatacatttatg |
383 |
Q |
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| T |
22719173 |
tttgttgtatcattagcatacatttatg |
22719200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 196 - 325
Target Start/End: Original strand, 22708647 - 22708778
Alignment:
| Q |
196 |
tatattccaatcttaatcctgtttttatgtttggatggtcatttttt---cctttattgtggtttagccttgtttcttgtagttttgcatttgtttaaaa |
292 |
Q |
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| T |
22708647 |
tatattcgaatcttaatcctgtttttatgtttggatggtcattttttttccctttattgtggtttagctttgtttcttgtggtttagcatttgtttaaaa |
22708746 |
T |
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| Q |
293 |
taaatatatccagcagcaaattaagggtaatat |
325 |
Q |
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| T |
22708747 |
taaat-catccatcagcaaattaaaggtaatat |
22708778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 215 - 297
Target Start/End: Complemental strand, 23872189 - 23872105
Alignment:
| Q |
215 |
tgtttttatgtttggatggtcattt--tttcctttattgtggtttagccttgtttcttgtagttttgcatttgtttaaaataaat |
297 |
Q |
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| T |
23872189 |
tgtttttatctttggatggtcatttgtttttctttattgtggtttatccttgtgtcttgtggtttagcatttgtttaaaataaat |
23872105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 69 - 171
Target Start/End: Original strand, 22706409 - 22706511
Alignment:
| Q |
69 |
ttaaacctcctatacaaccacctataccggtcccaagcgcgccgcatatacaccctccaaggccatctcgaccacctcccaagatgtaagaattcagaac |
168 |
Q |
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| T |
22706409 |
ttaaacctcctatacgaaaaccgattacagtcccaagtgcaccacatatacaccctccacagcgatctcgaccacctcccatgatgtaagaattcagaac |
22706508 |
T |
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| Q |
169 |
gca |
171 |
Q |
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||| |
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| T |
22706509 |
gca |
22706511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 218 - 297
Target Start/End: Original strand, 22706638 - 22706719
Alignment:
| Q |
218 |
ttttatgtttggatggtcattt--tttcctttattgtggtttagccttgtttcttgtagttttgcatttgtttaaaataaat |
297 |
Q |
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|||||| ||||||||||||||| ||| ||||||||||||||| |||||| |||||| |||| ||||||||||||||||||| |
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| T |
22706638 |
ttttatctttggatggtcatttgtttttctttattgtggtttatccttgtgtcttgtggtttagcatttgtttaaaataaat |
22706719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 69 - 171
Target Start/End: Complemental strand, 23872417 - 23872315
Alignment:
| Q |
69 |
ttaaacctcctatacaaccacctataccggtcccaagcgcgccgcatatacaccctccaaggccatctcgaccacctcccaagatgtaagaattcagaac |
168 |
Q |
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| T |
23872417 |
ttaaacctcctatacgaaaaccgattacagtcccaagtgcaccacatatacaccctccacagcgatctcgaccacctcccatgatgtaagaattcagaac |
23872318 |
T |
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| Q |
169 |
gca |
171 |
Q |
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||| |
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| T |
23872317 |
gca |
23872315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 300 - 381
Target Start/End: Original strand, 22653160 - 22653241
Alignment:
| Q |
300 |
atccagcagcaaattaagggtaatatattatgtatcgttgaaatattttacacttgtttgttgtatcattagcatacattta |
381 |
Q |
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|||||||| |||||||| || |||| || |||| |||||||||||||||||||||||||||| ||||||| | ||||||||| |
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| T |
22653160 |
atccagcaacaaattaaaggcaatacatcatgtctcgttgaaatattttacacttgtttgttttatcatttgtatacattta |
22653241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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