View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1866_low_4 (Length: 397)
Name: NF1866_low_4
Description: NF1866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1866_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 120; Significance: 3e-61; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 256 - 391
Target Start/End: Original strand, 31405596 - 31405731
Alignment:
| Q |
256 |
gaaccaatcattaccaaaaatggtttccaatcttgagaatttattcatagcttctatgtgtgacctattgtttagcatgaaaatatggcgtaaagctggg |
355 |
Q |
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| T |
31405596 |
gaaccaatcattaccaaaaatggtttccaatcttgagaatttattcatagcttctatgtgtgacctattatttagcatgaaaatatggcgtaaagctcgg |
31405695 |
T |
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| Q |
356 |
tccttacaattttcggacttgactattaatattctt |
391 |
Q |
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| T |
31405696 |
tccttacaattttcggacttgactatcaattttctt |
31405731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 17 - 225
Target Start/End: Original strand, 31405357 - 31405565
Alignment:
| Q |
17 |
agcaagatatttcctacagatgatattatttcttcccttaacttattttcatatataaaccactcagactggactctgcatatcgcttcaaagtgactgt |
116 |
Q |
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| T |
31405357 |
agcaagatatttcccacagatgatatgatttctccccttagctgacttccataaataaaccacgcagactgaactctgcatattgcttcaaagcgattgt |
31405456 |
T |
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| Q |
117 |
tgaacaaataaatattctctttcagtaactcttctgtaatgttgtctttgttgtccagcttcagaaagtccatcaccttattccatgagattcttttata |
216 |
Q |
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| T |
31405457 |
tgaacaaatgaatcttctctttcaataactcttttgtaatgctttcattgttgtccagcttgagaaagtccatcacctcatcccatgcgcttcttttata |
31405556 |
T |
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| Q |
217 |
aagatcaag |
225 |
Q |
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| T |
31405557 |
aagatcaag |
31405565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 164 - 211
Target Start/End: Original strand, 31287286 - 31287333
Alignment:
| Q |
164 |
ttgttgtccagcttcagaaagtccatcaccttattccatgagattctt |
211 |
Q |
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| T |
31287286 |
ttgttgtccagtttcaaaaagtccaacaccttattccatgagcttctt |
31287333 |
T |
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