View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1866_low_6 (Length: 388)
Name: NF1866_low_6
Description: NF1866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1866_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 17 - 126
Target Start/End: Original strand, 31274961 - 31275070
Alignment:
| Q |
17 |
aaaagcatcaagaccaacacacacaaatcaagcagaaaaataatattatcaggcttcagaaataattcttatctttatttcgaatttccgaccactagaa |
116 |
Q |
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| T |
31274961 |
aaaagcatcaagaccaacacacacaaatcaagcagaaaaataatattatcaggcttcagaaataattcttatctttatttcgaatttccgaccactagaa |
31275060 |
T |
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| Q |
117 |
ggccaatttt |
126 |
Q |
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| T |
31275061 |
ggccaatttt |
31275070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 113 - 369
Target Start/End: Original strand, 31275088 - 31275331
Alignment:
| Q |
113 |
agaaggccaattttaagtagaaagaaataatttatttttcttaccttataaaagtgtaagttttggaaaagagttgacttaaaaatactctcatcatatg |
212 |
Q |
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| T |
31275088 |
agaaggccaattttaaatggacagaaataatttatttttcttaccttataaaagtgtaagtttttgaaaagagttcacttaaaaatactctcaccatatg |
31275187 |
T |
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| Q |
213 |
atnnnnnnnnngtgcatgttcttgggttccaaccttgggcatgcagaagtgttaaaatctataggaagagcttaccaattatttgagttccacaatactc |
312 |
Q |
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| T |
31275188 |
ataaaaaaaaagtgcatgtt-------------cctgggcatgcagcagcgttaaaatctataggaagagcttatcaatcatttgggttccacaatgatc |
31275274 |
T |
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| Q |
313 |
gaggaattaatctatgtagttgcgaatggaggatacccgtcttacacacacaaaaaa |
369 |
Q |
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| T |
31275275 |
gaaaaattagtctatgtagttgcgcatggaggatacccgtcttacacacaaaaaaaa |
31275331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 159
Target Start/End: Complemental strand, 9642918 - 9642842
Alignment:
| Q |
84 |
cttatctttatttcgaatttccg-accactagaaggccaattttaagtagaaagaaataatttatttttcttacctt |
159 |
Q |
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| T |
9642918 |
cttatctttatttggagtttccttaccacttgaaggccaattttaaatgaaaagaaataacttccttttcttacctt |
9642842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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