View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1866_low_7 (Length: 355)

Name: NF1866_low_7
Description: NF1866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1866_low_7
NF1866_low_7
[»] chr5 (7 HSPs)
chr5 (18-271)||(29499495-29499748)
chr5 (187-271)||(16967365-16967449)
chr5 (189-226)||(16967509-16967546)
chr5 (189-241)||(13739566-13739618)
chr5 (191-285)||(25603559-25603652)
chr5 (192-269)||(21575637-21575714)
chr5 (189-258)||(26009131-26009199)
[»] chr1 (12 HSPs)
chr1 (189-271)||(27260598-27260680)
chr1 (191-284)||(38289652-38289744)
chr1 (191-285)||(48872703-48872798)
chr1 (183-285)||(35414459-35414562)
chr1 (189-271)||(5466224-5466306)
chr1 (184-241)||(38762200-38762257)
chr1 (189-227)||(27260739-27260777)
chr1 (192-285)||(46859515-46859609)
chr1 (189-258)||(4604724-4604793)
chr1 (191-234)||(48872590-48872633)
chr1 (189-270)||(29936843-29936924)
chr1 (191-284)||(41411044-41411136)
[»] chr4 (7 HSPs)
chr4 (191-269)||(25467896-25467974)
chr4 (191-271)||(33085259-33085339)
chr4 (189-271)||(50645524-50645607)
chr4 (189-245)||(54128172-54128228)
chr4 (189-234)||(4272457-4272502)
chr4 (186-227)||(50645428-50645469)
chr4 (184-269)||(54342884-54342969)
[»] chr2 (3 HSPs)
chr2 (189-256)||(41317312-41317379)
chr2 (189-234)||(41317210-41317255)
chr2 (189-241)||(15260435-15260487)
[»] chr7 (5 HSPs)
chr7 (189-271)||(2819353-2819435)
chr7 (189-271)||(11778678-11778760)
chr7 (189-271)||(19223546-19223628)
chr7 (189-271)||(17117047-17117129)
chr7 (190-271)||(12651212-12651293)
[»] chr8 (7 HSPs)
chr8 (191-271)||(40649564-40649645)
chr8 (189-241)||(7612098-7612150)
chr8 (191-285)||(12946519-12946614)
chr8 (191-234)||(12946678-12946721)
chr8 (191-271)||(12171981-12172062)
chr8 (191-271)||(12416409-12416490)
chr8 (189-241)||(44952757-44952809)
[»] chr3 (14 HSPs)
chr3 (191-271)||(33976285-33976365)
chr3 (189-285)||(34608182-34608281)
chr3 (192-271)||(31425630-31425709)
chr3 (189-271)||(4617776-4617858)
chr3 (191-241)||(47479110-47479160)
chr3 (189-271)||(49875894-49875975)
chr3 (189-271)||(50886494-50886576)
chr3 (189-269)||(31350495-31350575)
chr3 (192-271)||(37143203-37143280)
chr3 (192-271)||(31930927-31931006)
chr3 (189-227)||(35987055-35987093)
chr3 (189-242)||(1291644-1291697)
chr3 (192-245)||(31664733-31664786)
chr3 (192-271)||(50886292-50886369)
[»] scaffold0481 (1 HSPs)
scaffold0481 (189-271)||(1090-1172)
[»] chr6 (4 HSPs)
chr6 (192-258)||(28982533-28982599)
chr6 (189-271)||(34383747-34383829)
chr6 (192-245)||(10729697-10729750)
chr6 (191-271)||(354372-354451)


Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 271
Target Start/End: Original strand, 29499495 - 29499748
Alignment:
Q  18 ggattaattcttaaaacaaagtaacaaataactaaggaatcaacatataaaaatgccaattaaggtaaaaagtaactactacggaccgtgacttgtaatc 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  29499495 ggattaattcttaaaacaaagtaacaaataactaaggaatcaacatataaaaatgccaattaaggtaaaaagtaactactccggaccgtgacttgtaatc 29499594  T
Q  118 acatgaactccatcccttttattgttatccctaccaataaacaaaaaccttgaaatatgcatgtagtttaaaggaatgatattttgacatccaattttca 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |    
T  29499595 acatgaactccatcccttttattgttatccctaccaataaacaaaaaccttgaaatatgcatgtagtttagaggaatgatattttgacatccaattttta 29499694  T
Q  218 acaatttttagggacaatctttttcctcgattcttattggatgataacaataga 271  Q
    |||||||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  29499695 acaatttttagggataatctttttcctcaattcttattggatgataacaataga 29499748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 187 - 271
Target Start/End: Original strand, 16967365 - 16967449
Alignment:
Q  187 aaaggaatgatattttgacatccaattttcaacaatttttagggacaatctttttcctcgattcttattggatgataacaataga 271  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||||  ||||||||| |||||||||||||||||||||||||    
T  16967365 aaaggaatgatattttgacatctaattttcaacaacttttagggacaacatttttcctctattcttattggatgataacaataga 16967449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 189 - 226
Target Start/End: Complemental strand, 16967546 - 16967509
Alignment:
Q  189 aggaatgatattttgacatccaattttcaacaattttt 226  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  16967546 aggaatgatattttgacatccaattttcaacaactttt 16967509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 241
Target Start/End: Complemental strand, 13739618 - 13739566
Alignment:
Q  189 aggaatgatattttgacatccaattttcaacaatttttagggacaatcttttt 241  Q
    |||||||||||||||||| |||| ||| ||||| |||||||||||| ||||||    
T  13739618 aggaatgatattttgacaaccaactttaaacaacttttagggacaaccttttt 13739566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 285
Target Start/End: Original strand, 25603559 - 25603652
Alignment:
Q  191 gaatgatattttgacatccaattttcaacaatttttagggacaatctttttcctcgattcttattggatgataacaataga-agaaagagagagag 285  Q
    |||||||||||||||| |||||||  |||||||||||| || ||  |||||||||  || ||||||||  ||||||||||| ||| ||||||||||    
T  25603559 gaatgatattttgacaaccaatttctaacaatttttagtgataacatttttcctc--tttttattggacaataacaatagagagagagagagagag 25603652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 269
Target Start/End: Original strand, 21575637 - 21575714
Alignment:
Q  192 aatgatattttgacatccaattttcaacaatttttagggacaatctttttcctcgattcttattggatgataacaata 269  Q
    ||||||||||||||| |||||||| |||||  ||||| |||||  |||||||||  |||||| ||||  |||||||||    
T  21575637 aatgatattttgacaaccaattttaaacaacatttagtgacaacatttttcctccgttcttaatggacaataacaata 21575714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 258
Target Start/End: Original strand, 26009131 - 26009199
Alignment:
Q  189 aggaatgatattttgacatccaattttcaacaatttttagggacaatctttttcctcgattcttattgga 258  Q
    ||||||||||||||||||  ||||||| ||||| |||||| ||||| | ||||||||  |||||||||||    
T  26009131 aggaatgatattttgacaatcaattttaaacaacttttagtgacaa-ccttttcctcttttcttattgga 26009199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 189 - 271
Target Start/End: Original strand, 27260598 - 27260680
Alignment:
Q  189 aggaatgatattttgacatccaattttcaacaatttttagggacaatctttttcctcgattcttattggatgataacaataga 271  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||  ||||||||||||||||||||||||    
T  27260598 aggattgatattttgacatccaattttcaacaatttttagagacaatatttttcctctgttcttattggatgataacaataga 27260680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 191 - 284
Target Start/End: Complemental strand, 38289744 - 38289652
Alignment:
Q  191 gaatgatattttgacatccaattttcaacaatttttagggacaatctttttcctcgattcttattggatgataacaatagaagaaagagagaga 284  Q
    |||||||||||||||||| |||||||||||| |||||| |||||  ||||| ||| ||||||||||||  |||||||||| ||| |||||||||    
T  38289744 gaatgatattttgacatcaaattttcaacaacttttagagacaactttttttctctattcttattggacaataacaatag-agatagagagaga 38289652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 191 - 285
Target Start/End: Complemental strand, 48872798 - 48872703
Alignment:
Q  191 gaatgatattttgacatccaattttcaacaatttttagggacaatctttttcctcgattcttattggatgataacaataga-agaaagagagagag 285  Q
    ||||||||| |||||||||||||||||| || || | ||||||| |||||||||| ||||||||||||  || |||||||| ||| ||||||||||    
T  48872798 gaatgatatattgacatccaattttcaataacttgttgggacaacctttttcctctattcttattggacaatgacaatagagagagagagagagag 48872703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 285
Target Start/End: Original strand, 35414459 - 35414562
Alignment:
Q  183 gtttaaaggaatgatattttgacatccaattttcaacaatttttagggacaatctttttcctcgattcttattggatgataacaataga-agaaagagag 281  Q
    ||||| ||||||||||||||||||||||||||| || || |||    |||||  ||||||||| ||||||||||||  ||||||||||| ||| ||||||    
T  35414459 gtttagaggaatgatattttgacatccaattttaaataactttggatgacaacttttttcctctattcttattggacaataacaatagagagagagagag 35414558  T
Q  282 agag 285  Q
    ||||    
T  35414559 agag 35414562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 189 - 271
Target Start/End: Original strand, 5466224 - 5466306
Alignment:
Q  189 aggaatgatattttgacatccaattttcaacaatttttagggacaatctttttcctcgattcttattggatgataacaataga 271  Q
    |||||||||||||||||| |||||||| ||||| |||  | ||||| ||||||||||  |||||||||||  |||||||||||    
T  5466224 aggaatgatattttgacaaccaattttaaacaactttgggtgacaacctttttcctcacttcttattggacaataacaataga 5466306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 241
Target Start/End: Original strand, 38762200 - 38762257
Alignment:
Q  184 tttaaaggaatgatattttgacatccaattttcaacaatttttagggacaatcttttt 241  Q
    |||| |||||||||||||||||| |||||||| ||||| |||||||||||| ||||||    
T  38762200 tttagaggaatgatattttgacaaccaattttaaacaacttttagggacaaccttttt 38762257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 227
Target Start/End: Complemental strand, 27260777 - 27260739
Alignment:
Q  189 aggaatgatattttgacatccaattttcaacaattttta 227  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  27260777 aggaatgatattttgacatccaattttcaacaactttta 27260739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 285
Target Start/End: Complemental strand, 46859609 - 46859515
Alignment:
Q  192 aatgatattttgacatccaattttcaacaatttttagggacaatctttttcctcgattcttattggatgataacaataga-agaaagagagagag 285  Q
    |||||||||| |||| ||||||| |||||| |||||| |||| |||||||||||  || ||||| ||  ||||||||||| ||| ||||||||||    
T  46859609 aatgatatttagacaaccaatttccaacaacttttagtgacagtctttttcctctctttttattagacaataacaatagagagagagagagagag 46859515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 189 - 258
Target Start/End: Complemental strand, 4604793 - 4604724
Alignment:
Q  189 aggaatgatattttgacatccaattttcaacaatttttagggacaatctttttcctcgattcttattgga 258  Q
    |||||||||||||||||| |||||||  ||||| ||||||||||||  ||||| ||  ||||||||||||    
T  4604793 aggaatgatattttgacaaccaatttaaaacaacttttagggacaactttttttcttcattcttattgga 4604724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 234
Target Start/End: Original strand, 48872590 - 48872633
Alignment:
Q  191 gaatgatattttgacatccaattttcaacaatttttagggacaa 234  Q
    ||||||||||||||||||||||||||||||| || ||| |||||    
T  48872590 gaatgatattttgacatccaattttcaacaacttatagagacaa 48872633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 270
Target Start/End: Complemental strand, 29936924 - 29936843
Alignment:
Q  189 aggaatgatattttgacatccaattttcaacaatttttagggacaatctttttcctcgattcttattggatgataacaatag 270  Q
    |||||||||||||| ||| |||||||| ||||| |||  |  ||||  ||||||||| |||||||||| || ||||||||||    
T  29936924 aggaatgatattttaacaaccaattttaaacaactttgggtaacaacttttttcctccattcttattgaataataacaatag 29936843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 284
Target Start/End: Complemental strand, 41411136 - 41411044
Alignment:
Q  191 gaatgatattttgacatccaattttcaacaatttttagggacaatctttttcctcgattcttattggatgataacaatagaagaaagagagaga 284  Q
    |||||||||||||||||| |||||  |||| ||||    |||||  ||||||||| ||||||||||||  |||||||||| ||| |||||||||    
T  41411136 gaatgatattttgacatctaatttcaaacagttttggatgacaacttttttcctccattcttattggacaataacaatag-agagagagagaga 41411044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 191 - 269
Target Start/End: Complemental strand, 25467974 - 25467896
Alignment:
Q  191 gaatgatattttgacatccaattttcaacaatttttagggacaatctttttcctcgattcttattggatgataacaata 269  Q
    ||||||||||||||||| ||||||||||||| ||||||||| ||| ||||| ||| |||||||||||||||||||||||    
T  25467974 gaatgatattttgacatgcaattttcaacaacttttagggataattttttttctctattcttattggatgataacaata 25467896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 191 - 271
Target Start/End: Complemental strand, 33085339 - 33085259
Alignment:
Q  191 gaatgatattttgacatccaattttcaacaatttttagggacaatctttttcctcgattcttattggatgataacaataga 271  Q
    |||||||||||||| || |||||||||| || ||||| ||||||||||||||||  ||| |||||||||||||||||||||    
T  33085339 gaatgatattttgatattcaattttcaataacttttatggacaatctttttcctttatttttattggatgataacaataga 33085259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 189 - 271
Target Start/End: Complemental strand, 50645607 - 50645524
Alignment:
Q  189 aggaatgatattttga-catccaattttcaacaatttttagggacaatctttttcctcgattcttattggatgataacaataga 271  Q
    |||| ||||||||||| ||||||||||||||||| |||||| |||||  ||||| ||| ||||||||||||| |||||||||||    
T  50645607 aggattgatattttgaacatccaattttcaacaacttttagagacaactttttttctctattcttattggataataacaataga 50645524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 189 - 245
Target Start/End: Complemental strand, 54128228 - 54128172
Alignment:
Q  189 aggaatgatattttgacatccaattttcaacaatttttagggacaatctttttcctc 245  Q
    |||||||||||||||||| |||||||| ||||| |||||| ||||| ||||||||||    
T  54128228 aggaatgatattttgacaaccaattttaaacaacttttagtgacaacctttttcctc 54128172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 234
Target Start/End: Original strand, 4272457 - 4272502
Alignment:
Q  189 aggaatgatattttgacatccaattttcaacaatttttagggacaa 234  Q
    |||||||||||||||||| ||||||| |||||| |||||| |||||    
T  4272457 aggaatgatattttgacaaccaatttccaacaacttttagtgacaa 4272502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 227
Target Start/End: Original strand, 50645428 - 50645469
Alignment:
Q  186 taaaggaatgatattttgacatccaattttcaacaattttta 227  Q
    |||| ||||||||||||||||| ||||||||||||| |||||    
T  50645428 taaaagaatgatattttgacattcaattttcaacaactttta 50645469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 269
Target Start/End: Complemental strand, 54342969 - 54342884
Alignment:
Q  184 tttaaaggaatgatattttgacatccaattttcaacaatttttagggacaatctttttcctcgattcttattggatgataacaata 269  Q
    |||| ||||||||||| |||||| |||||||| ||||| |||  | ||||| ||| ||||||  |||||||||||  |||||||||    
T  54342969 tttataggaatgatatcttgacaaccaattttaaacaactttgggtgacaaccttgttcctcctttcttattggacaataacaata 54342884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 9e-21; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 189 - 256
Target Start/End: Complemental strand, 41317379 - 41317312
Alignment:
Q  189 aggaatgatattttgacatccaattttcaacaatttttagggacaatctttttcctcgattcttattg 256  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||| ||||||||||    
T  41317379 aggaatgatattttgacatccaattttcaacaactttttgggacaatcttttttctctattcttattg 41317312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 189 - 234
Target Start/End: Original strand, 41317210 - 41317255
Alignment:
Q  189 aggaatgatattttgacatccaattttcaacaatttttagggacaa 234  Q
    |||||||||||||||||||| |||||||||||||||||||||||||    
T  41317210 aggaatgatattttgacatcaaattttcaacaatttttagggacaa 41317255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 241
Target Start/End: Complemental strand, 15260487 - 15260435
Alignment:
Q  189 aggaatgatattttgacatccaattttcaacaatttttagggacaatcttttt 241  Q
    |||||||||||||| ||| |||||||| || |||||||||||| |||||||||    
T  15260487 aggaatgatattttaacaaccaattttaaataatttttagggataatcttttt 15260435  T

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Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 189 - 271
Target Start/End: Complemental strand, 2819435 - 2819353
Alignment:
Q  189 aggaatgatattttgacatccaattttcaacaatttttagggacaatctttttcctcgattcttattggatgataacaataga 271  Q
    |||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||  || ||||||||  |||||||||||    
T  2819435 aggaatgatattttgacaaccaattttcaacaatttttagtgacaacctttttcctctctttttattggacaataacaataga 2819353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 189 - 271
Target Start/End: Complemental strand, 11778760 - 11778678
Alignment:
Q  189 aggaatgatattttgacatccaattttcaacaatttttagggacaatctttttcctcgattcttattggatgataacaataga 271  Q
    |||||||||||||||||| |||||||| ||||| ||||||||||||| ||||| ||   |||||||||||  |||| ||||||    
T  11778760 aggaatgatattttgacaaccaattttaaacaacttttagggacaattttttttcttccttcttattggacaataataataga 11778678  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 189 - 271
Target Start/End: Complemental strand, 19223628 - 19223546
Alignment:
Q  189 aggaatgatattttgacatccaattttcaacaatttttagggacaatctttttcctcgattcttattggatgataacaataga 271  Q
    ||||||||||||||||||  |||||||||| ||||||||  |||||| |||||||||  || ||||||||  |||||||||||    
T  19223628 aggaatgatattttgacaatcaattttcaataatttttaatgacaatttttttcctctctttttattggacaataacaataga 19223546  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 271
Target Start/End: Original strand, 17117047 - 17117129
Alignment:
Q  189 aggaatgatattttgacatccaattttcaacaatttttagggacaatctttttcctcgattcttattggatgataacaataga 271  Q
    |||||||||||||||||| ||||||||  ||||||||  | ||||| |||||||||| ||||||| ||||  ||| |||||||    
T  17117047 aggaatgatattttgacaaccaattttagacaattttgggtgacaacctttttcctccattcttactggacaatagcaataga 17117129  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 271
Target Start/End: Original strand, 12651212 - 12651293
Alignment:
Q  190 ggaatgatattttgacatccaattttcaacaatttttagggacaatctttttcctcgattcttattggatgataacaataga 271  Q
    ||||||||||||||||| ||||||| |||||| |||| | |||||  |||||||||  ||  |||||||  |||||||||||    
T  12651212 ggaatgatattttgacaaccaatttccaacaacttttggtgacaacttttttcctctttttctattggacaataacaataga 12651293  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 191 - 271
Target Start/End: Complemental strand, 40649645 - 40649564
Alignment:
Q  191 gaatgatatttt-gacatccaattttcaacaatttttagggacaatctttttcctcgattcttattggatgataacaataga 271  Q
    |||||||||||| |||| ||||||||||||||||||||| ||||| |||||||||| ||| ||||||||  ||| |||||||    
T  40649645 gaatgatatttttgacaaccaattttcaacaatttttagtgacaacctttttcctctatttttattggacaatagcaataga 40649564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 189 - 241
Target Start/End: Original strand, 7612098 - 7612150
Alignment:
Q  189 aggaatgatattttgacatccaattttcaacaatttttagggacaatcttttt 241  Q
    |||||||||||||||||| |||||||| ||||| |||||||||||||||||||    
T  7612098 aggaatgatattttgacaaccaattttaaacaacttttagggacaatcttttt 7612150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 285
Target Start/End: Original strand, 12946519 - 12946614
Alignment:
Q  191 gaatgatattttgacatccaattttcaacaatttttagggacaatctttttcctcgattcttattggatgataacaataga-agaaagagagagag 285  Q
    ||||||||||||||||||||||||||||||| |||| |||||||  ||||| ||| ||| |||||| |  || |||||||| ||| ||||||||||    
T  12946519 gaatgatattttgacatccaattttcaacaactttttgggacaactttttttctctatttttattgaacaatgacaatagagagagagagagagag 12946614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 234
Target Start/End: Complemental strand, 12946721 - 12946678
Alignment:
Q  191 gaatgatattttgacatccaattttcaacaatttttagggacaa 234  Q
    |||||||||||||||||||||||||||| |||||||||||||||    
T  12946721 gaatgatattttgacatccaattttcaataatttttagggacaa 12946678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 271
Target Start/End: Original strand, 12171981 - 12172062
Alignment:
Q  191 gaatgatattttgacatccaattttcaacaatttttagggacaatctttttcctcgattctta-ttggatgataacaataga 271  Q
    |||||||||||||||| |||||||| ||||| |||||| ||||| ||||||||||  |||||| |||||  |||||||||||    
T  12171981 gaatgatattttgacaaccaattttaaacaaattttagtgacaacctttttcctcccttcttatttggacaataacaataga 12172062  T

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Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 271
Target Start/End: Original strand, 12416409 - 12416490
Alignment:
Q  191 gaatgatattttgacatccaattttcaacaatttttagggacaatctttttcctcgattctta-ttggatgataacaataga 271  Q
    |||||||||||||||| |||||||| ||||| |||||| ||||| ||||||||||  |||||| |||||  |||||||||||    
T  12416409 gaatgatattttgacaaccaattttaaacaaattttagtgacaacctttttcctcccttcttatttggacaataacaataga 12416490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 241
Target Start/End: Complemental strand, 44952809 - 44952757
Alignment:
Q  189 aggaatgatattttgacatccaattttcaacaatttttagggacaatcttttt 241  Q
    ||||||||||||||||||  ||||||  |||||||||||| ||||||||||||    
T  44952809 aggaatgatattttgacaatcaatttctaacaatttttagtgacaatcttttt 44952757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 191 - 271
Target Start/End: Original strand, 33976285 - 33976365
Alignment:
Q  191 gaatgatattttgacatccaattttcaacaatttttagggacaatctttttcctcgattcttattggatgataacaataga 271  Q
    |||||||||||||||||  ||||||||||||||||||| |||||   ||||||||  || ||||||||| |||||||||||    
T  33976285 gaatgatattttgacatttaattttcaacaatttttagtgacaacacttttcctctctttttattggataataacaataga 33976365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 285
Target Start/End: Complemental strand, 34608281 - 34608182
Alignment:
Q  189 aggaatgatattttgacatccaattttcaacaatttttagggacaatctttttcctcgattcttattggatgataacaataga---agaaagagagagag 285  Q
    ||||||||||||||||||   |||||| ||||| ||||||||| ||||||||| ||   |||||||||||| |||| ||||||   ||||||||||||||    
T  34608281 aggaatgatattttgacaattaattttaaacaacttttagggataatcttttttcttccttcttattggataataataatagagagagaaagagagagag 34608182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 271
Target Start/End: Complemental strand, 31425709 - 31425630
Alignment:
Q  192 aatgatattttgacatccaattttcaacaatttttagggacaatctttttcctcgattcttattggatgataacaataga 271  Q
    ||||||||||||||| | ||||||||| ||||||||  ||||| ||||||||||  || ||||||||  |||||||||||    
T  31425709 aatgatattttgacaactaattttcaataatttttaatgacaacctttttcctctctttttattggacaataacaataga 31425630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 271
Target Start/End: Complemental strand, 4617858 - 4617776
Alignment:
Q  189 aggaatgatattttgacatccaattttcaacaatttttagggacaatctttttcctcgattcttattggatgataacaataga 271  Q
    ||||||||||||||||||||||||||  |||||||||    |||| | ||||||||| ||| ||||||||  |||||||||||    
T  4617858 aggaatgatattttgacatccaatttcaaacaattttggatgacagtttttttcctctatttttattggacaataacaataga 4617776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 241
Target Start/End: Complemental strand, 47479160 - 47479110
Alignment:
Q  191 gaatgatattttgacatccaattttcaacaatttttagggacaatcttttt 241  Q
    ||||||||||||||||  ||||||| ||||||||||||||||||| |||||    
T  47479160 gaatgatattttgacaatcaattttaaacaatttttagggacaattttttt 47479110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 271
Target Start/End: Complemental strand, 49875975 - 49875894
Alignment:
Q  189 aggaatgatattttgacatccaattttcaacaatttttagggacaatctttttcctcgattcttattggatgataacaataga 271  Q
    |||||||||||||||||| ||||||| |||||| |||||| |||||| |||||||||  || | ||||||  |||||||||||    
T  49875975 aggaatgatattttgacaaccaatttccaacaacttttagtgacaat-tttttcctctcttttcattggacaataacaataga 49875894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 271
Target Start/End: Complemental strand, 50886576 - 50886494
Alignment:
Q  189 aggaatgatattttgacatccaattttcaacaatttttagggacaatctttttcctcgattcttattggatgataacaataga 271  Q
    |||||||||||||||||| ||||||||  |||| |||  | ||||| |||||||||| ||||||||||||  ||| |||||||    
T  50886576 aggaatgatattttgacaaccaattttagacaactttgggtgacaacctttttcctccattcttattggacaatagcaataga 50886494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 269
Target Start/End: Original strand, 31350495 - 31350575
Alignment:
Q  189 aggaatgatattttgacatccaattttcaacaatttttagggacaatctttttcctcgattcttattggatgataacaata 269  Q
    |||||||||||||||||| ||||||| |||||| |||||| |||||  ||||| |||  || ||||||||  |||||||||    
T  31350495 aggaatgatattttgacaaccaatttccaacaacttttagtgacaactttttttctctctttttattggacaataacaata 31350575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 271
Target Start/End: Complemental strand, 37143280 - 37143203
Alignment:
Q  192 aatgatattttgacatccaattttcaacaatttttagggacaatctttttcctcgattcttattggatgataacaataga 271  Q
    ||||||||||||||| | ||||| |||||| |||||| ||||| ||||||||||  || ||||||||  |||||||||||    
T  37143280 aatgatattttgacaactaatttccaacaacttttagtgacaacctttttcctc--tttttattggacaataacaataga 37143203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 192 - 271
Target Start/End: Original strand, 31930927 - 31931006
Alignment:
Q  192 aatgatattttgacatccaattttcaacaatttttagggacaatctttttcctcgattcttattggatgataacaataga 271  Q
    ||||||||||||||| ||||||| |||||| |||||| || || ||||||||||  || | ||||||  |||||||||||    
T  31930927 aatgatattttgacaaccaatttccaacaaattttagtgataacctttttcctctcttttcattggagaataacaataga 31931006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 227
Target Start/End: Complemental strand, 35987093 - 35987055
Alignment:
Q  189 aggaatgatattttgacatccaattttcaacaattttta 227  Q
    |||||||||||||||||| |||||||||||||| |||||    
T  35987093 aggaatgatattttgacaaccaattttcaacaactttta 35987055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 242
Target Start/End: Complemental strand, 1291697 - 1291644
Alignment:
Q  189 aggaatgatattttgacatccaattttcaacaatttttagggacaatctttttc 242  Q
    |||||||||||||||||| | || ||| |||||||||||| || ||||||||||    
T  1291697 aggaatgatattttgacaactaaattttaacaatttttagtgataatctttttc 1291644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 245
Target Start/End: Complemental strand, 31664786 - 31664733
Alignment:
Q  192 aatgatattttgacatccaattttcaacaatttttagggacaatctttttcctc 245  Q
    ||||||||||||||| ||||||| |||||| |||||| || || ||||||||||    
T  31664786 aatgatattttgacaaccaatttccaacaacttttagtgataacctttttcctc 31664733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 271
Target Start/End: Complemental strand, 50886369 - 50886292
Alignment:
Q  192 aatgatattttgacatccaattttcaacaatttttagggacaatctttttcctcgattcttattggatgataacaataga 271  Q
    |||||||||||||||  ||||||||||||| ||| || |||||  |||||||||  || ||||||||  |||||||||||    
T  50886369 aatgatattttgacaatcaattttcaacaactttcagtgacaacgtttttcctc--tttttattggacaataacaataga 50886292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0481 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 189 - 271
Target Start/End: Original strand, 1090 - 1172
Alignment:
Q  189 aggaatgatattttgacatccaattttcaacaatttttagggacaatctttttcctcgattcttattggatgataacaataga 271  Q
    |||||||||||||||||| |||||||| ||||| |||  | ||||| ||||||||||  |||||||||||  |||||||||||    
T  1090 aggaatgatattttgacaaccaattttaaacaactttgggtgacaacctttttcctcacttcttattggacaataacaataga 1172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 192 - 258
Target Start/End: Original strand, 28982533 - 28982599
Alignment:
Q  192 aatgatattttgacatccaattttcaacaatttttagggacaatctttttcctcgattcttattgga 258  Q
    ||||||||||||||| |||||||||||||| |||||| ||||| ||||||||||  || ||||||||    
T  28982533 aatgatattttgacaaccaattttcaacaacttttagtgacaacctttttcctctctttttattgga 28982599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 189 - 271
Target Start/End: Original strand, 34383747 - 34383829
Alignment:
Q  189 aggaatgatattttgacatccaattttcaacaatttttagggacaatctttttcctcgattcttattggatgataacaataga 271  Q
    ||||||||||||||||||||||||||  ||||| |||||| ||||| | ||||||||  || ||||||||  |||||||||||    
T  34383747 aggaatgatattttgacatccaatttctaacaacttttagtgacaacccttttcctctctttttattggacaataacaataga 34383829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 192 - 245
Target Start/End: Complemental strand, 10729750 - 10729697
Alignment:
Q  192 aatgatattttgacatccaattttcaacaatttttagggacaatctttttcctc 245  Q
    ||||||||||||||| ||||||| |||||| |||||| ||||| ||||||||||    
T  10729750 aatgatattttgacaaccaatttccaacaacttttagtgacaacctttttcctc 10729697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 271
Target Start/End: Complemental strand, 354451 - 354372
Alignment:
Q  191 gaatgatattttgacatccaattttcaacaatttttagggacaatctttttcctcgattcttattggatgataacaataga 271  Q
    |||||||||||||||| ||||||| |||||| ||||| ||| ||| |||||||||  || ||||||||  |||||||||||    
T  354451 gaatgatattttgacaaccaatttccaacaacttttaaggataatttttttcctctctt-ttattggacaataacaataga 354372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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