View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1866_low_9 (Length: 280)
Name: NF1866_low_9
Description: NF1866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1866_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 40 - 264
Target Start/End: Original strand, 2151359 - 2151583
Alignment:
| Q |
40 |
attaccattggttcaccagaattatttttgactggaaccttagcaaacccaattttactacatgatgaattccacaaattagtaagaggtgattctatgg |
139 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2151359 |
attaccattggttcaccagaattatttgtgactggaaccttagcaaacccaattttactacacgatgaattccacaaattagtaagaggtgattctatgg |
2151458 |
T |
|
| Q |
140 |
tatacacaatcgtataactgccactgcttagacaaggtatattaggaagatcatcaaatggttccttttcaacattgttggtacaattgagaaatattac |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2151459 |
tatacacaatcgtataactgccactgcttagacaaggtatattaggaagatcatcaaatggttccttttcaacattgttggtacaattgagaaatattac |
2151558 |
T |
|
| Q |
240 |
gttttcataatgatcattttcataa |
264 |
Q |
| |
|
|||||||||||| |||||||||||| |
|
|
| T |
2151559 |
gttttcataatggtcattttcataa |
2151583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 2141796 - 2142036
Alignment:
| Q |
13 |
aatatatcagagtttagtccatcattgattaccattggttcaccagaattatttttgactggaaccttagcaaacccaattttactacatgatgaattcc |
112 |
Q |
| |
|
||||||||||||| ||||||||| | ||||||| ||||| ||| || |||||| |||| ||||||||||| | | ||| | | ||| |||| | ||| |
|
|
| T |
2141796 |
aatatatcagagtatagtccatcgtggattaccgttggtagaccggatttatttatgaccggaaccttagctgatcgaatctcatgacacgatggactcc |
2141895 |
T |
|
| Q |
113 |
acaaattagtaagaggtgattctatggtatacacaatcgtataactgccactgcttagacaaggtatattaggaagatcatcaaa---tggttccttttc |
209 |
Q |
| |
|
|||||||| |||||||||||| || ||||||| |||| ||| || || |||||||||||||||||||||||||||||||||| |||| | ||| | |
|
|
| T |
2141896 |
acaaattactaagaggtgattgtaacgtatacatgatcgaatacttgtcattgcttagacaaggtatattaggaagatcatcaaacattggtccgtttgc |
2141995 |
T |
|
| Q |
210 |
aacattgttggtacaattgagaaatattacgttttcataat |
250 |
Q |
| |
|
|| |||| | ||||| ||||||||| ||||||||||||||| |
|
|
| T |
2141996 |
aaaattggtagtacagttgagaaatgttacgttttcataat |
2142036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 38 - 252
Target Start/End: Original strand, 2145950 - 2146167
Alignment:
| Q |
38 |
tgattaccattggttcaccagaattatttttgactggaaccttagcaaacccaattttactacatgatgaattccacaaattagtaagaggtgattctat |
137 |
Q |
| |
|
|||| |||||||||| ||| || |||| ||| ||||||||||||||| | ||||| | | ||| |||| | ||||||||||| |||| |||||| || |
|
|
| T |
2145950 |
tgataaccattggttgaccggatttatctttaactggaaccttagcagatccaatctcatgacacgatggactccacaaattaccaagaagtgattgtaa |
2146049 |
T |
|
| Q |
138 |
ggtatacacaatcgtataactgccactgcttagacaaggtatatta---ggaagatcatcaaa---tggttccttttcaacattgttggtacaattgaga |
231 |
Q |
| |
|
| ||||| ||| ||| || || |||||||||||||||||||| ||||||| |||||| |||||||||| || || || |||||||||||| |
|
|
| T |
2146050 |
cgcatacatgatcaaatagttgtcattgcttagacaaggtatattattaggaagatgatcaaacattggttcctttgca---tttttagtacaattgaga |
2146146 |
T |
|
| Q |
232 |
aatattacgttttcataatga |
252 |
Q |
| |
|
||| ||||||||||||||||| |
|
|
| T |
2146147 |
aatgttacgttttcataatga |
2146167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University