View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18670_high_2 (Length: 319)
Name: NF18670_high_2
Description: NF18670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18670_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 34843407 - 34843106
Alignment:
| Q |
1 |
atagattacatcactaaattatcaagtagctggatgaaatttttactaaaaatgtccaatgtacaagcactttgttactcaataaataattccactccaa |
100 |
Q |
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| T |
34843407 |
atagattacatcactaaattatcaagtagctggatgaaatttttactaaaaatgtccaatgtacaagcactttgttactcaataaataattccactccaa |
34843308 |
T |
|
| Q |
101 |
taaatttgcaacatttgcatcctataacttgtctcaatccaaaggttctactttggtggatgccaaagatcttgatagctatgtcacaccannnnnnnaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
34843307 |
taaatttgcaacatttgcatcctataacttgtctcaatccaaaggttctactttggtggatgccaaagatcttgatagctatgtcacaccatttttttaa |
34843208 |
T |
|
| Q |
201 |
tccttgatggccttttaattttgcaaagagttatcactttccttaagtcaagattagcaacagaaattaagcaataatcattttgtatagatgaggaaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34843207 |
tccttgatggccttttaattttgcaaagagttatcactttccttaagtcaagattagcaacagaaattaagcaataatcattttgtatagatgaggaaat |
34843108 |
T |
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| Q |
301 |
tg |
302 |
Q |
| |
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|| |
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| T |
34843107 |
tg |
34843106 |
T |
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