View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18670_high_3 (Length: 222)
Name: NF18670_high_3
Description: NF18670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18670_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 34 - 202
Target Start/End: Original strand, 40665617 - 40665785
Alignment:
| Q |
34 |
gaacctgtgaaaagagaggatgaagaaagacttgatgaagttggttatgatgatgtgggtggtgttaggaagcaaatggcacagattcgcgagttggtcg |
133 |
Q |
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| T |
40665617 |
gaacctgtgaaaagagatgatgaagaaagacttgatgaagttggttatgatgatgtgggtggtgttaggaagcaaatggcacagattcgcgagttggtcg |
40665716 |
T |
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| Q |
134 |
agcttccactgaggcatccacaactttttaagtcaattggtgtgaaagcacctaaaggaattttgcttt |
202 |
Q |
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| T |
40665717 |
agcttccacttaggcatccacaactttttaagtcaattggtgcgaaagcacctaaaggaattttgcttt |
40665785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 34 - 197
Target Start/End: Complemental strand, 40724437 - 40724286
Alignment:
| Q |
34 |
gaacctgtgaaaagagaggatgaagaaagacttgatgaagttggttatgatgatgtgggtggtgttaggaagcaaatggcacagattcgcgagttggtcg |
133 |
Q |
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| T |
40724437 |
gaacccgtgaaaagagaggatgaagaaaggcttgatgaagtcggttatgatgatgtgggtggttttaggaagcaaatggcacagatccgtgagttggtcg |
40724338 |
T |
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| Q |
134 |
agcttccactgaggcatccacaactttttaagtcaattggtgtgaaagcacctaaaggaatttt |
197 |
Q |
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| T |
40724337 |
agctt------------ccacaactttttaagtcaattggtgtgaaaccacccaaaggaatttt |
40724286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 67 - 198
Target Start/End: Original strand, 27977061 - 27977192
Alignment:
| Q |
67 |
gatgaagttggttatgatgatgtgggtggtgttaggaagcaaatggcacagattcgcgagttggtcgagcttccactgaggcatccacaactttttaagt |
166 |
Q |
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| T |
27977061 |
gatgaggttggttatgatgatgttggtggtgttagaaagcagatggctcagattcgggaactggtggaactgccattgaggcatccacaattattcaagt |
27977160 |
T |
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| Q |
167 |
caattggtgtgaaagcacctaaaggaattttg |
198 |
Q |
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| T |
27977161 |
ctattggtgtgaagccaccaaaagggattttg |
27977192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 176
Target Start/End: Complemental strand, 41093243 - 41093134
Alignment:
| Q |
67 |
gatgaagttggttatgatgatgtgggtggtgttaggaagcaaatggcacagattcgcgagttggtcgagcttccactgaggcatccacaactttttaagt |
166 |
Q |
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| T |
41093243 |
gatgaggttggttatgatgacgttggtggtgtgagaaagcagatggcacagattagggaactggttgaattgccactgaggcacccacaattattcaagt |
41093144 |
T |
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| Q |
167 |
caattggtgt |
176 |
Q |
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| T |
41093143 |
ctattggtgt |
41093134 |
T |
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