View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18671_high_6 (Length: 334)
Name: NF18671_high_6
Description: NF18671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18671_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-140; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 18 - 326
Target Start/End: Complemental strand, 6932895 - 6932587
Alignment:
| Q |
18 |
ctgctatgctgtatgtcacttgcgttgtatacttgcgatgcatatctccct--gtggcatcaggagggagtgtgtggtttcctaatcacattgttatact |
115 |
Q |
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| T |
6932895 |
ctgctatgctgtatgtcacttgcgttgtatacttgcgatgcatatctcccacagtggcatcaggagggagcgtgtgatttcctaatcacatttttatact |
6932796 |
T |
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| Q |
116 |
tataccagatgatcgagatatgtggactagaaaacaaggagacggcataaagttctccaattcatagtcaatttatttcacttcattcgagaggaattac |
215 |
Q |
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| T |
6932795 |
tttaccagatgatcgagat--gtggactagaaaacaaggagacggcataaagttctccaattcatagtcaatttatttcacttcattcgagaggaattac |
6932698 |
T |
|
| Q |
216 |
attgctatgtttaggcataaattactattatttgagtagttgtcaatatttctttgctaaccatttttaagagggtttattaacctttatgtttcctgtt |
315 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |
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| T |
6932697 |
attgctatgtttaggcataaattactataatttgagtagttgttaatatttctttgctaaccatttttaagaaggtttattaacctttaggtttcctgtt |
6932598 |
T |
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| Q |
316 |
tattagcctat |
326 |
Q |
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||||||||||| |
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| T |
6932597 |
tattagcctat |
6932587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 245
Target Start/End: Original strand, 6485769 - 6485994
Alignment:
| Q |
18 |
ctgctatgctgtatgtcacttgcgttgtatacttgcgatgcatatctccctgtggcatcaggagggagtgtgtggtttcctaatcacattgttatactta |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
6485769 |
ctgctatgctgtatgtcacttgcgttgtatacttgcgatgcatatctctcagtggcatcaggagggagcgtgtggtttcctaatcacattgttatactta |
6485868 |
T |
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| Q |
118 |
taccagatgatcgagatatgtggactagaaaacaaggagacggcataaagttctccaattcatagtcaatttatttcacttcattcgagaggaattacat |
217 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6485869 |
taccagatgatcgagat--gtggactagaaaacaaggagacggcataaagttctccaattcatagtcaatttatttcacttcattcgagaggaattacat |
6485966 |
T |
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| Q |
218 |
tgctatgtttaggcataaattactatta |
245 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
6485967 |
tgctatgtttaggcataaattactatta |
6485994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 293 - 326
Target Start/End: Original strand, 6485990 - 6486023
Alignment:
| Q |
293 |
tattaacctttatgtttcctgtttattagcctat |
326 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
6485990 |
tattaacctttatgtttcctgtttattagcctat |
6486023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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