View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18671_high_7 (Length: 317)
Name: NF18671_high_7
Description: NF18671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18671_high_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 134; Significance: 9e-70; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 70 - 219
Target Start/End: Original strand, 43569282 - 43569429
Alignment:
| Q |
70 |
gtttcttcttctgtctactactaatactatctatctatcattagaaaactgattactatcattctcactaaatcccttataatcgtcattttctctcctt |
169 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43569282 |
gtttcttcttctgtctactactaata-ta-ctatctatcattagaaaactgattactatcattctcactaaatcccttataatcgtcattttctctcctt |
43569379 |
T |
|
| Q |
170 |
aattaatcttaacaatctcttaaaagagtaattaatacacaccgacgttt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43569380 |
aattaatcttaacaatctcttaaaagagtaattaatacacaccgacgttt |
43569429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 223 - 280
Target Start/End: Original strand, 43569460 - 43569516
Alignment:
| Q |
223 |
gtcatttaaccattataggcataaggaaacacctaagacaatcgatgagctttattga |
280 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43569460 |
gtcatttaaccattatag-cataaggaaacacctaagacaatcgatgagctttattga |
43569516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University