View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18671_low_1 (Length: 975)

Name: NF18671_low_1
Description: NF18671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18671_low_1
NF18671_low_1
[»] chr6 (20 HSPs)
chr6 (659-855)||(2986761-2986957)
chr6 (453-653)||(2987015-2987228)
chr6 (659-855)||(2928127-2928318)
chr6 (659-824)||(2935663-2935828)
chr6 (694-851)||(2952983-2953140)
chr6 (453-653)||(2985959-2986155)
chr6 (857-957)||(3002848-3002960)
chr6 (897-957)||(2954967-2955027)
chr6 (897-957)||(2986612-2986672)
chr6 (897-954)||(2952838-2952895)
chr6 (1-90)||(2928454-2928547)
chr6 (897-951)||(2974890-2974944)
chr6 (747-796)||(2955324-2955373)
chr6 (779-851)||(2955220-2955292)
chr6 (897-938)||(2935508-2935549)
chr6 (901-954)||(2965404-2965457)
chr6 (813-858)||(3002775-3002820)
chr6 (897-957)||(2927989-2928051)
chr6 (689-791)||(2985775-2985878)
chr6 (899-936)||(2983761-2983798)
[»] scaffold0024 (5 HSPs)
scaffold0024 (661-858)||(43204-43401)
scaffold0024 (750-851)||(33991-34092)
scaffold0024 (897-954)||(34180-34237)
scaffold0024 (566-653)||(33739-33829)
scaffold0024 (604-653)||(43082-43131)
[»] chr7 (3 HSPs)
chr7 (659-825)||(3340056-3340223)
chr7 (897-957)||(3339881-3339941)
chr7 (553-587)||(3340362-3340396)
[»] chr8 (2 HSPs)
chr8 (120-210)||(37201067-37201157)
chr8 (662-692)||(7473110-7473140)


Alignment Details
Target: chr6 (Bit Score: 129; Significance: 3e-66; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 659 - 855
Target Start/End: Complemental strand, 2986957 - 2986761
Alignment:
Q  659 taatcaatttaccatttactcaagtgttgcactctcttattttgtcgatgttcctcttctttttcaatcatttaaactaatttgtattaattcacactca 758  Q
    |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||| ||   | |||||||| |||    
T  2986957 taataaatttaccatttactcaagtgttgcactctcttattttatcgatgttcctcttctttttcaattatataaactaaatttcgtcaattcacattca 2986858  T
Q  759 aaagtaatttggatctaaattatccaaacaacttgaataatgaaaaatcacttttcaattaaggtattaaatcataaatcacgttacattaaactca 855  Q
    ||| |||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||| |||||||||||||||    
T  2986857 aaaataattttgatttaaattatccaaacaacttgaataatgataaatcacttttcaattaaggtatcaaaacataaatcatgttacattaaactca 2986761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 453 - 653
Target Start/End: Complemental strand, 2987228 - 2987015
Alignment:
Q  453 tttaagtaaaatggagagtgagagcataaatgtagggatatatgataaaaa-----taattaatgtggtgcttttttggttgtga-------gttggaag 540  Q
    |||||||||||||||| ||||||||||||||||| ||||||||| ||||||     |||||||||| ||||||||||||||||||       ||||||||    
T  2987228 tttaagtaaaatggagggtgagagcataaatgtaaggatatatggtaaaaaaataataattaatgtcgtgcttttttggttgtgacttgtgagttggaag 2987129  T
Q  541 acatgcgacgtaagttcacaagatcaaacgtgagttatgtactaaatcaacttgtc-gtggaaactctaaataattttaagtgattgttgttcgaaaatc 639  Q
    |||   ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| | |||||||||||||||||||||||| ||| ||    
T  2987128 acacttgacgtaagttcacaagatcaaacgtgagttatgtactaaatcaacttgtcaatggaaactgttaataattttaagtgattgttgttccaaattc 2987029  T
Q  640 gattcaaggttgga 653  Q
    ||||||||||||||    
T  2987028 gattcaaggttgga 2987015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 659 - 855
Target Start/End: Complemental strand, 2928318 - 2928127
Alignment:
Q  659 taatcaatttaccatttactcaagtgttgcactctcttattttgtcgatgttcctcttctttttcaatcatttaaactaatttgtattaattcacactca 758  Q
    ||||||||||||||||||||||||     |||||||||||||| |  | || |||||||||||| ||||||| |||| | |||   | ||||||||||||    
T  2928318 taatcaatttaccatttactcaag-----cactctcttattttattaacgtgcctcttcttttttaatcattcaaaccagttttggtaaattcacactca 2928224  T
Q  759 aaagtaatttggatctaaattatccaaacaacttgaataatgaaaaatcacttttcaattaaggtattaaatcataaatcacgttacattaaactca 855  Q
    |||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||| ||| ||||| |||| |||  |||||||||    
T  2928223 aaagtaattttgatctaaattatctaaacaacttgaattatgaaaaatcacttttcaatcaaggtatcaaaacataagtcaccttaacttaaactca 2928127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 659 - 824
Target Start/End: Complemental strand, 2935828 - 2935663
Alignment:
Q  659 taatcaatttaccatttactcaagtgttgcactctcttattttgtcgatgttcctcttctttttcaatcatttaaactaatttgtattaattcacactca 758  Q
    |||||||||||||||||| ||||||||| || | ||||||||| | || ||||||||||||||| ||||||| ||||   |||  || |||||||| |||    
T  2935828 taatcaatttaccatttagtcaagtgtttcattgtcttattttattgacgttcctcttcttttttaatcattcaaacgcgttttgataaattcacattca 2935729  T
Q  759 aaagtaatttggatctaaattatccaaacaacttgaataatgaaaaatcacttttcaattaaggta 824  Q
    |||  ||||| ||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||    
T  2935728 aaaacaattttgatctaaattatccaaacaacatgaattatgaaaaatcacttttcaatcaaggta 2935663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 694 - 851
Target Start/End: Complemental strand, 2953140 - 2952983
Alignment:
Q  694 cttattttgtcgatgttcctcttctttttcaatcatttaaactaatttgtattaattcacactcaaaagtaatttggatctaaattatccaaacaacttg 793  Q
    |||||||| | |||||||||||||||||| ||||||| |||||| |||  || ||||||| || ||||||||||| |||||||||| |||||||||||||    
T  2953140 cttattttatggatgttcctcttcttttttaatcattcaaactagttttgataaattcactcttaaaagtaattttgatctaaattctccaaacaacttg 2953041  T
Q  794 aataatgaaaaatcacttttcaattaaggtattaaatcataaatcacgttacattaaa 851  Q
    ||| |||||||||||||||||||| ||| |||  || ||||||||| | |||||||||    
T  2953040 aattatgaaaaatcacttttcaatcaagatatccaaacataaatcatgatacattaaa 2952983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 453 - 653
Target Start/End: Complemental strand, 2986155 - 2985959
Alignment:
Q  453 tttaagtaaaatgga-gagtgagagcataaatgtagggatatatgataaaaataattaatgtggtgcttttttggttgtgagttggaagacatgcgacgt 551  Q
    ||||||||||||||| ||||||||  |||||||||||| ||||||| |||||  ||    || |||||| ||||||||||||||||||| ||   |||||    
T  2986155 tttaagtaaaatggaagagtgagactataaatgtaggggtatatgaaaaaaaagat----gtcgtgcttgtttggttgtgagttggaaggcacttgacgt 2986060  T
Q  552 aagttcacaagatcaaacgtgagttatgtactaaatcaacttgtcgtggaaactctaaataattttaagtgattgttgttcgaaaatcgattcaaggttg 651  Q
    ||||||| | | ||||||| ||||||||| ||||||||| ||||  |||  ||||||| |||||||| ||||||||||||| ||| | |||| |||||||    
T  2986059 aagttcatagggtcaaacgagagttatgttctaaatcaaattgt-ttggggactctaactaattttatgtgattgttgttccaaactggatttaaggttg 2985961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 857 - 957
Target Start/End: Original strand, 3002848 - 3002960
Alignment:
Q  857 ttcattcaaaaacaattattatcaccgtggaaccaaacacac------------attagtttggagtttctacctgcacccctagattttgccatccaca 944  Q
    ||||||||||||||||| |||||||||||||||||||| |||            ||||||||| |||||||||||||||||||||||||||||| |||||    
T  3002848 ttcattcaaaaacaattgttatcaccgtggaaccaaacgcacgcgagacacgacattagtttgaagtttctacctgcacccctagattttgccaaccaca 3002947  T
Q  945 ctatcagacccat 957  Q
    |||||||||||||    
T  3002948 ctatcagacccat 3002960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 897 - 957
Target Start/End: Complemental strand, 2955027 - 2954967
Alignment:
Q  897 acattagtttggagtttctacctgcacccctagattttgccatccacactatcagacccat 957  Q
    ||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  2955027 acattagttaggagtttctacctgcaaccctagattttgccaaccacactatcagacccat 2954967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 897 - 957
Target Start/End: Complemental strand, 2986672 - 2986612
Alignment:
Q  897 acattagtttggagtttctacctgcacccctagattttgccatccacactatcagacccat 957  Q
    ||||||||| ||||||||||  |||||||||||||||||||| ||||||||||||||||||    
T  2986672 acattagttaggagtttctagttgcacccctagattttgccaaccacactatcagacccat 2986612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 897 - 954
Target Start/End: Complemental strand, 2952895 - 2952838
Alignment:
Q  897 acattagtttggagtttctacctgcacccctagattttgccatccacactatcagacc 954  Q
    ||||||||| ||| |||||||||||||||||||||||||||| | |||||||||||||    
T  2952895 acattagttaggaatttctacctgcacccctagattttgccaacaacactatcagacc 2952838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 2928547 - 2928454
Alignment:
Q  1 caaatctaagaaactgaaaaactatcgaaacagtacaccagagactgacagacta---gttgaaacag-ctctggaatcatactagaatcacca 90  Q
    ||||||||||||||||||||||   | ||||||||||||||||| ||||||||||   |||||||||| | ||| ||||||||| |||||||||    
T  2928547 caaatctaagaaactgaaaaaccgcccaaacagtacaccagagattgacagactagttgttgaaacagcccctgcaatcatacttgaatcacca 2928454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 897 - 951
Target Start/End: Complemental strand, 2974944 - 2974890
Alignment:
Q  897 acattagtttggagtttctacctgcacccctagattttgccatccacactatcag 951  Q
    ||||||||| |||||||||||||||||||||||||||| ||| | ||||||||||    
T  2974944 acattagttaggagtttctacctgcacccctagatttttccaacaacactatcag 2974890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 747 - 796
Target Start/End: Complemental strand, 2955373 - 2955324
Alignment:
Q  747 aattcacactcaaaagtaatttggatctaaattatccaaacaacttgaat 796  Q
    |||||||| ||| ||||||||| |||||||||||||||||||||||||||    
T  2955373 aattcacattcagaagtaattttgatctaaattatccaaacaacttgaat 2955324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 779 - 851
Target Start/End: Complemental strand, 2955292 - 2955220
Alignment:
Q  779 tatccaaacaacttgaataatgaaaaatcacttttcaattaaggtattaaatcataaatcacgttacattaaa 851  Q
    ||||||||  |||||||| ||||||||||||||||||||||||||||   | ||||||| | |||||||||||    
T  2955292 tatccaaaacacttgaattatgaaaaatcacttttcaattaaggtatcctaacataaattatgttacattaaa 2955220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 897 - 938
Target Start/End: Complemental strand, 2935549 - 2935508
Alignment:
Q  897 acattagtttggagtttctacctgcacccctagattttgcca 938  Q
    |||||||||  |||||||||||||||||||||||||||||||    
T  2935549 acattagttatgagtttctacctgcacccctagattttgcca 2935508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 901 - 954
Target Start/End: Complemental strand, 2965457 - 2965404
Alignment:
Q  901 tagtttggagtttctacctgcacccctagattttgccatccacactatcagacc 954  Q
    ||||| |||||||||||||| | ||||||||||||||| | |||||||||||||    
T  2965457 tagttaggagtttctacctgaaaccctagattttgccaacaacactatcagacc 2965404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 813 - 858
Target Start/End: Original strand, 3002775 - 3002820
Alignment:
Q  813 tcaattaaggtattaaatcataaatcacgttacattaaactcattt 858  Q
    ||||||||||||||||| ||||||||| |||||| |||||||||||    
T  3002775 tcaattaaggtattaaaacataaatcatgttacactaaactcattt 3002820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 897 - 957
Target Start/End: Complemental strand, 2928051 - 2927989
Alignment:
Q  897 acattagtttggagtttctacctgcacccctaga--ttttgccatccacactatcagacccat 957  Q
    ||||||||  |||||||||||||||||||| |||  |||||||| |||| |||||||||||||    
T  2928051 acattagtcaggagtttctacctgcaccccaagattttttgccaaccacgctatcagacccat 2927989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 689 - 791
Target Start/End: Complemental strand, 2985878 - 2985775
Alignment:
Q  689 actctcttattttgtcgatgttcctcttct-ttttcaatcatttaaactaatttgtattaattcacactcaaaagtaatttggatctaaattatccaaac 787  Q
    ||||||||||||  | |||| ||||||||| |||| ||||||| |||||| |||   | ||| ||||||||| |||||||| ||| ||||||| ||||||    
T  2985878 actctcttatttgattgatgctcctcttctttttttaatcattcaaactagttttggtaaatgcacactcaagagtaatttcgatttaaattacccaaac 2985779  T
Q  788 aact 791  Q
    ||||    
T  2985778 aact 2985775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 899 - 936
Target Start/End: Complemental strand, 2983798 - 2983761
Alignment:
Q  899 attagtttggagtttctacctgcacccctagattttgc 936  Q
    ||||||| ||||||| ||||||||||||||||||||||    
T  2983798 attagttaggagtttttacctgcacccctagattttgc 2983761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 106; Significance: 2e-52; HSPs: 5)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 661 - 858
Target Start/End: Original strand, 43204 - 43401
Alignment:
Q  661 atcaatttaccatttactcaagtgttgcactctcttattttgtcgatgttcctcttctttttcaatcatttaaactaatttgtattaattcacactcaaa 760  Q
    ||||||| ||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||| |||||| |||  || |||||||||| |||    
T  43204 atcaattcaccatttactcaagtgttgcagtctcttattttattgatgttcctcttctttttcaatcattcaaactagttttgataaattcacacttaaa 43303  T
Q  761 agtaatttggatctaaattatccaaacaacttgaataatgaaaaatcacttttcaattaaggtattaaatcataaatcacgttacattaaactcattt 858  Q
    ||| |||| |||| |||||||||||||||||||||| ||||||||||| |||||||| ||| |||| || |||||||||  ||| |||||| ||||||    
T  43304 agtcatttcgatcaaaattatccaaacaacttgaattatgaaaaatcatttttcaatcaagatattcaaacataaatcatattatattaaagtcattt 43401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 750 - 851
Target Start/End: Original strand, 33991 - 34092
Alignment:
Q  750 tcacactcaaaagtaatttggatctaaattatccaaacaacttgaataatgaaaaatcacttttcaattaaggtattaaatcataaatcacgttacatta 849  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||| ||| |||  ||  |||||||| |||||||||    
T  33991 tcacactcaaaagtaattttgatctaaattatccaaataacttgaattatgaaaaatcacttttcaatcaagctatccaaatataaatcatgttacatta 34090  T
Q  850 aa 851  Q
    ||    
T  34091 aa 34092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 897 - 954
Target Start/End: Original strand, 34180 - 34237
Alignment:
Q  897 acattagtttggagtttctacctgcacccctagattttgccatccacactatcagacc 954  Q
    |||||| || ||||||||||| ||||||| |||||||||||| | |||||||||||||    
T  34180 acattacttaggagtttctacttgcacccgtagattttgccaacaacactatcagacc 34237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 566 - 653
Target Start/End: Original strand, 33739 - 33829
Alignment:
Q  566 aaacgtgagttatgtact----aaatcaacttgtcgtggaaactctaaataattttaagtgattgttgttcgaaaatcgattcaaggttgga 653  Q
    ||||||||||||||||||    ||||||||||||  ||||  ||||  || |||||| ||||||||||||| |||||||||| |||||||||    
T  33739 aaacgtgagttatgtacttaataaatcaacttgtt-tggatgctctttatcattttacgtgattgttgttccaaaatcgatttaaggttgga 33829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 604 - 653
Target Start/End: Original strand, 43082 - 43131
Alignment:
Q  604 ctctaaataattttaagtgattgttgttcgaaaatcgattcaaggttgga 653  Q
    |||| |||||||||| ||||||||||||| |||||| ||| |||||||||    
T  43082 ctcttaataattttatgtgattgttgttccaaaatcaatttaaggttgga 43131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 2e-39; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 659 - 825
Target Start/End: Complemental strand, 3340223 - 3340056
Alignment:
Q  659 taatcaatttaccatttactcaagtgttgcactctcttattttgtcgatgttcctcttctttttc-aatcatttaaactaatttgtattaattcacactc 757  Q
    ||||||||||| |||||| |||||||||||||||||||||||| | || |||||| ||||||||  ||||||| |||| | |||  || |||||||||||    
T  3340223 taatcaatttatcatttagtcaagtgttgcactctcttattttattgacgttccttttctttttttaatcattaaaaccagttttgataaattcacactc 3340124  T
Q  758 aaaagtaatttggatctaaattatccaaacaacttgaataatgaaaaatcacttttcaattaaggtat 825  Q
    |||||||||||  |||||||||||||||||||||||||| ||||||| | |||||||||| |||||||    
T  3340123 aaaagtaattttaatctaaattatccaaacaacttgaattatgaaaatttacttttcaatcaaggtat 3340056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 897 - 957
Target Start/End: Complemental strand, 3339941 - 3339881
Alignment:
Q  897 acattagtttggagtttctacctgcacccctagattttgccatccacactatcagacccat 957  Q
    ||||||||| ||||||||||| |||||||||||||||||||| ||| | ||||||||||||    
T  3339941 acattagttaggagtttctacatgcacccctagattttgccaaccatattatcagacccat 3339881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 553 - 587
Target Start/End: Complemental strand, 3340396 - 3340362
Alignment:
Q  553 agttcacaagatcaaacgtgagttatgtactaaat 587  Q
    |||||||| ||||||||||||||||||||||||||    
T  3340396 agttcacatgatcaaacgtgagttatgtactaaat 3340362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 120 - 210
Target Start/End: Original strand, 37201067 - 37201157
Alignment:
Q  120 aaataaacgcctcttttgctaagattatccttagaataaagcttattaaggaaaagccgcctaactaacactgacaatgtagagggaatta 210  Q
    ||||||||  |||||||||||||||| |||||||||  |||| ||||| |||||||| ||| |||||||||  ||||| ||||||||||||    
T  37201067 aaataaacctctcttttgctaagattttccttagaaggaagcctattatggaaaagctgccaaactaacacaaacaatttagagggaatta 37201157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 662 - 692
Target Start/End: Complemental strand, 7473140 - 7473110
Alignment:
Q  662 tcaatttaccatttactcaagtgttgcactc 692  Q
    |||||||||||||||||||||||||||||||    
T  7473140 tcaatttaccatttactcaagtgttgcactc 7473110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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