View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18671_low_11 (Length: 263)
Name: NF18671_low_11
Description: NF18671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18671_low_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 12 - 261
Target Start/End: Original strand, 6260654 - 6260908
Alignment:
| Q |
12 |
tatttaagtatccttttattagatgcaaatggtacggagggggtataaaactttggccgatctagtagacttgtagtacctatgttgttttttgtctcct |
111 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6260654 |
tatttaagcatcattttattagatgcaaatggtacggagggggtataaaactttggccgatctagtagacttgtagtacctatgttgttttttgtctcct |
6260753 |
T |
|
| Q |
112 |
gaatgtccatcagcctttggtcaacatgtgcaccc-----aaaagtcaatattattttgagtagattttcttcattaattatttgaagtggtagacctta |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
6260754 |
aaatgtccatcagcctttggtcaacatgtgcacccaaaagaaaagtcaatattattttgagtaaattttcttcattaattatttgaagtggtagacctta |
6260853 |
T |
|
| Q |
207 |
atttccatattttataaatttgttggctaattacataaataaccatacgtatttt |
261 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6260854 |
atttccatgttttataaatttgttggctaattacataaataaccatacgtatttt |
6260908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University