View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18671_low_12 (Length: 261)
Name: NF18671_low_12
Description: NF18671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18671_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 42642567 - 42642819
Alignment:
| Q |
1 |
cactaatttagtgagccaaaaatatattgtcattcaagaactactaacgcatgaaaatatattttggaaggaaaggaatgacaaaaaatttagaaatcaa |
100 |
Q |
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| T |
42642567 |
cactaatttagtgagccaaaaatatattgtcattcaagaactactaacacatgaaaatatattttggaaggaaagaaatgacaaaaattttagaaatcaa |
42642666 |
T |
|
| Q |
101 |
gaagtccgtattcatcagcttttgaacaaaattaagctgatctctttttggtgtttgaaggcaaaatatccccaaattggtttcaactatcataattgat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||| | |
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| T |
42642667 |
gaagtccgtattcatcagcttttgaacaaaattaagctgatctctttttggtgtttgaaggcaaaatatccctaaattggtttcgattatcataattggt |
42642766 |
T |
|
| Q |
201 |
ggttttgtccgtttactttgttctttattgttttgaacttggttgttcttttc |
253 |
Q |
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||||||||| ||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
42642767 |
ggttttgtctgtttactttattctttattgttttgaatttggttgttcttttc |
42642819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 90 - 218
Target Start/End: Complemental strand, 36251908 - 36251780
Alignment:
| Q |
90 |
ttagaaatcaagaagtccgtattcatcagcttttgaacaaaattaagctgatctctttttggtgtttgaaggcaaaatatccccaaattggtttcaacta |
189 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||| || | ||||||| ||| ||| || ||||||| |||| |||||||| || |
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| T |
36251908 |
ttagaaatcaagaagtgcgtattcatcagcttttgaacaaaattaagttgttatcttttttgtggctgacggaaaaatattcccatattggttttgggta |
36251809 |
T |
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| Q |
190 |
tcataattgatggttttgtccgtttactt |
218 |
Q |
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| T |
36251808 |
ccataattggtggttttgtccatttactt |
36251780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 152
Target Start/End: Complemental strand, 38107228 - 38107168
Alignment:
| Q |
92 |
agaaatcaagaagtccgtattcatcagcttttgaacaaaattaagctgatctctttttggt |
152 |
Q |
| |
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|||||||||||||| ||||||| ||| ||||| |||||||||||||| | ||||| |||| |
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| T |
38107228 |
agaaatcaagaagtgtgtattcaccagtttttggacaaaattaagctgttatctttgtggt |
38107168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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