View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18671_low_2 (Length: 741)
Name: NF18671_low_2
Description: NF18671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18671_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 452; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 19 - 494
Target Start/End: Original strand, 34907655 - 34908130
Alignment:
| Q |
19 |
gaggcatggagaaatgtatgatagatgcagaaaacaaaggaacttaaaaatgggcaaagtactgaacaaagtaacatacaaatatgctaagtttaatcac |
118 |
Q |
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| T |
34907655 |
gaggcatggagaaatgtatgatagatgcagaaaacaaaggaacttaaaaatgggcaaagtactgaacaaagtaacatacaaatatgctaagtttaatcac |
34907754 |
T |
|
| Q |
119 |
aaaatcataaatatatacatacaagtaaatcaatcattaggaagtatctccaattatgctgagttcacatatcattaacaccaataattcaaagaaggtg |
218 |
Q |
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| T |
34907755 |
aaaatcataaatatatacatacaagtaaatcaatcattaggaagtatctccaattatgctgagttcacatatcattaacaccaataattcaaagaaggtg |
34907854 |
T |
|
| Q |
219 |
aaaagtgcagatctaatcatattgtgctctaggccagatctacaggtgagatagactaatcaagttgagacatcctcacaactaatgttttcctataatg |
318 |
Q |
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| T |
34907855 |
aaacgtgcagatctaatcatattgtgctctaggccagatctacaggtgagatagactaatcaagttgaaacatcctcacaactaatgttttcctataatg |
34907954 |
T |
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| Q |
319 |
cagtacataaacttctaaagaatcaactcaaaggattagtcatctaggtatagacatcggaatggtttatacatacacttagccactcaaatttaatgct |
418 |
Q |
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| T |
34907955 |
cagtacataaacttctaaataatcaactcaaaggattagtcatctaggtatagacatcggaacggtttatacatacacttagccactcaaatttaatgtt |
34908054 |
T |
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| Q |
419 |
tattataaggaatggggtaacaagggccaaatttaactgataccttgtcaaggatcaaccctcccaaaagctcaga |
494 |
Q |
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| T |
34908055 |
tattataaggaatggggtagcaagggccaaatttaactgataccttgtcaaggatcaaccctcccaaaagctcaga |
34908130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 513 - 731
Target Start/End: Original strand, 34908210 - 34908428
Alignment:
| Q |
513 |
tttttaatgtttaaatgatacaatcatatttcatacaaacaattttcannnnnnnggtttacaacggcttgtttaatatttaaccactagtaggagggat |
612 |
Q |
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| T |
34908210 |
tttttaatgtttaaatgatacaatcatatttcatacaaacaattttcattttcttggtttacaacggcttgtttaatatttaaccactagtaggagggat |
34908309 |
T |
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| Q |
613 |
ggttgtactttactgaaatttatttatcatcacaaacaaccctgcctaacatgcttgggcttggtggaggtggtggatgtcgtaggaatctttaattgat |
712 |
Q |
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| T |
34908310 |
ggttgtactttactgaaatttatttatcatcacaaataaccctgcctaacaggcttgggcttggtggaggtggtggatgtcgtaggaatctttaatcgat |
34908409 |
T |
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| Q |
713 |
catatatatgtaattccta |
731 |
Q |
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| T |
34908410 |
catttatatgtaattccta |
34908428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 24 - 311
Target Start/End: Original strand, 34894099 - 34894382
Alignment:
| Q |
24 |
atggagaaatgtatgatagatgcagaaaacaaaggaa-cttaaaaatgggcaaagtactgaacaaagtaacatacaaatatgctaagtttaatcacaaaa |
122 |
Q |
| |
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||||| |||||||||||| | || |||| ||||||| | |||| |||| ||| |||||||||||| ||||||||||| |||| |||||||||||||||| |
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| T |
34894099 |
atggataaatgtatgataca--cacaaaagaaaggaatcctaaacatggacaacgtactgaacaaaataacatacaaagatgccaagtttaatcacaaaa |
34894196 |
T |
|
| Q |
123 |
tcataaatatatacatacaagtaaatcaatcattaggaagtatctccaattatgctgagttcacatatcattaacaccaataattcaaagaaggtgaaaa |
222 |
Q |
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|||||||||| ||| ||| |||| ||| | |||||||||| ||||| ||||||||| || | ||||||||||||||||||||||||||||||| |
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| T |
34894197 |
tcataaatattcacacacaggtaattcatttattaggaagtctctccgtttatgctgactt----ttccattaacaccaataattcaaagaaggtgaaac |
34894292 |
T |
|
| Q |
223 |
gtgcagatctaatcatattgtgctctaggccagatctacagg-tgagatagactaatcaagttgagacatcctcacaactaatgttttcc |
311 |
Q |
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|||||||| | ||||| || ||||| |||| |||||||| | |||||| ||||||||||||||||||||||| |||| | ||||||| |
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| T |
34894293 |
atgcagatcaacacatatagttctctacaccaggtctacaggtttagatagcctaatcaagttgagacatcctcataactgacgttttcc |
34894382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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