View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18671_low_3 (Length: 543)
Name: NF18671_low_3
Description: NF18671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18671_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 500; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 1 - 528
Target Start/End: Complemental strand, 39488025 - 39487498
Alignment:
| Q |
1 |
ttcccaattccaaaccttcttatcctcgggcagtctccatgaaataggaatgttgagaatttgattggcttcgaaagcattgaaactatgcagcacaagt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
39488025 |
ttcccaattccaaaccttcttatcctcgggcagtctccatgaaataggaatgttgagaatttggttggcttcgaaagcattgaaactatgcagcacaagt |
39487926 |
T |
|
| Q |
101 |
tcttttttccattgtttcaaatcaacatcaattaaatctgctacaacagcatcctcatttaaattgaagactgggctccacaccttgaagctcgacagtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
39487925 |
tcttttttccattgtttcaaatcaacatcaattaaatctgctacaacagcatcctcatttaaattgcagactgggctccacaccttgaagctcgacagtt |
39487826 |
T |
|
| Q |
201 |
caggaagccaagggtctttccagattttaacttgttgcccattaccaatcgaccatctccatccgagatcaatcacagatttagcattcatcaaactgcg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39487825 |
caggaagccaagggtctttccagattttaacttgttgcccattaccaatcgaccatctccatccgagatcaatcacagatttagcattcatcaaactgcg |
39487726 |
T |
|
| Q |
301 |
ccaagcatagctgggctggtagccaatttgagcatccaaaaaacatgatctggaaaagtacctactcttgaacacccgagaaaggagggagtgttcgttg |
400 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
39487725 |
ccaagcatagctgggctggtagtcaatttgagcatccaaaaaacatgatctggcaaagtacatactcttgaacacccgagaaaggagggagtgttcgttg |
39487626 |
T |
|
| Q |
401 |
ttcatgagtcgccaacattgcttccctagaagcgccttgttaaaatcactgaagcctccgaagccaagtcctcctttgctttttgctcttcctaatcgat |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
39487625 |
ttcatgagtcgccaacattgcttccctagaagcgccttgttaaaatcactgaagcctctgaagccaagtcctcctttgctttttgctcttcctaaccgat |
39487526 |
T |
|
| Q |
501 |
cccaactcatccagtgaattttcctttg |
528 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
39487525 |
cccaactcatccagtgaattttcctttg |
39487498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 170 - 525
Target Start/End: Original strand, 5806906 - 5807262
Alignment:
| Q |
170 |
actgggctccacaccttgaagctcgacagttcaggaagccaagggtctttccagattttaacttgttgcccattaccaatcgaccatct-ccatccgaga |
268 |
Q |
| |
|
||||| ||||| ||||||||||| | | ||||||||||||||||| ||||| ||| ||||||||||||| || ||||| ||||| || | | || ||| |
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|
| T |
5806906 |
actggactccaaaccttgaagcttggtaactcaggaagccaagggtccttccatattctaacttgttgcccgtttccaattgaccacctgcaaaccaaga |
5807005 |
T |
|
| Q |
269 |
tcaatcacagatttagcattcatcaaactgcgccaagcatagctgggctggtagccaatttgagcatccaaaaaacatgatctggaaaagtacctactct |
368 |
Q |
| |
|
||||| | ||||| ||||| ||| || | ||||||||| || ||||| || ||| | | || | |||||||| || ||| | |||||||||||||| |
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|
| T |
5807006 |
tcaattattgattttgcattacacaagcttctccaagcataactaggctgataaccactacgtgccttcaaaaaacttgttctcggaaagtacctactct |
5807105 |
T |
|
| Q |
369 |
tgaacacccgagaaaggagggagtgttcgttgttcatgagtcgccaacattgcttccctagaagcgccttgttaaaatcactgaagcctccgaagccaag |
468 |
Q |
| |
|
| ||||||| |||||||| |||||||| ||| ||| || ||||| |||||||| | || || || ||||| || || |||| |||| || || || |
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|
| T |
5807106 |
taaacacccatgaaaggagagagtgttcattggacatcagccgccaccattgctttcataagagagctttgttgaactcgttgaatcctctaaaaccgag |
5807205 |
T |
|
| Q |
469 |
tcctcctttgctttttgctcttcctaatcgatcccaactcatccagtgaattttcct |
525 |
Q |
| |
|
|||||||| | ||||||||| |||||| |||||||| ||||| ||||||||||| |
|
|
| T |
5807206 |
acctccttttccttttgctctccctaatttgtcccaacttatccaatgaattttcct |
5807262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 1 - 528
Target Start/End: Complemental strand, 46034147 - 46033621
Alignment:
| Q |
1 |
ttcccaattccaaaccttcttatcctcgggcagtctccatgaaataggaatgttgagaatttgattggcttcgaaagcattgaaactatgcagcacaagt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
46034147 |
ttcccaattccaaaccttcttatcctcgggcagtctccatgaaataggaatgttgagaatttggttggcttcgaaagcattgaaactatgcagcacaagt |
46034048 |
T |
|
| Q |
101 |
tcttttttccattgtttcaaatcaacatcaattaaatctgctacaacagcatcctcatttaaattgaagactgggctccacaccttgaagctcgacagtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||| ||||||| |
|
|
| T |
46034047 |
tcttttttccattgtttcaaatcaacatcaattaaatctgctacaacaacatcctcatttaaattgtagactgggctctacaccttgaagcttgacagtt |
46033948 |
T |
|
| Q |
201 |
caggaagccaagggtctttccagattttaacttgttgcccattaccaatcgaccatctccatccgagatcaatcacagatttagcattcatcaaactgcg |
300 |
Q |
| |
|
||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
|
|
| T |
46033947 |
caggaagccaaaggtctttccaaattttaactt-ttgcccattaccaatcgaccatctccatccgagatcaattacagatttagcattcatcaaactaca |
46033849 |
T |
|
| Q |
301 |
ccaagcatagctgggctggtagccaatttgagcatccaaaaaacatgatctggaaaagtacctactcttgaacacccgagaaaggagggagtgttcgttg |
400 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46033848 |
ccaagcatagctgggctggcagccaatttgagcatccaaaaaacatgatctggcaaagtacctactcttgaacacccgagaaaggagggagtgttcgttg |
46033749 |
T |
|
| Q |
401 |
ttcatgagtcgccaacattgcttccctagaagcgccttgttaaaatcactgaagcctccgaagccaagtcctcctttgctttttgctcttcctaatcgat |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
46033748 |
ttcatgagtcgccaacattgcttccctagaagtgccttgttaaaatcactgaagcctctgaagccaagtcctcctttgctttttgctcttcctaaccgat |
46033649 |
T |
|
| Q |
501 |
cccaactcatccagtgaattttcctttg |
528 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
46033648 |
cccaactcatccagtgaattttcctttg |
46033621 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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