View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18671_low_4 (Length: 488)
Name: NF18671_low_4
Description: NF18671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18671_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 458; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 11 - 472
Target Start/End: Complemental strand, 40440687 - 40440226
Alignment:
| Q |
11 |
atcatcaagtcttgaaggaacagtaatgtaagaatcagatatagcagaataaactgagaagtgaacagatttgacaccaagttcagaagctaattttgga |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40440687 |
atcatcaagtcttgaaggaacagtaatgtaagaatcagatatagcagaataaactgagaagtgaacagatttgacaccaagttcagaagctaattttgga |
40440588 |
T |
|
| Q |
111 |
agccagttttgtgcaaagtcaaagaaaacataatgaggtttgagttctaacaaaagggacttaatttgaggttgagtgaggtctagggcatgaatgagat |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40440587 |
agccagttttgtgcaaagtcaaagaaaacataatgaggtttgagttctaacaaaagggacttaatttgaggttgagtgaggtctagggcatgaatgagat |
40440488 |
T |
|
| Q |
211 |
ttccagctaagtgaggtggcaattcagcagtgttggttatgccatttgggaactgaagtggaataatttggatggatgggttgagattaagagtggattt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40440487 |
ttccagctaagtgaggtggcaattcagcagtgttggttatgccatttgggaactgaagtggaataatttggatggatgggttgagattaagagtggattt |
40440388 |
T |
|
| Q |
311 |
gattttgtgaatgttggatgaagctgataagaaagttatgtgaactccttgagaaaatagcttgttggataattgaacaaaaggacttatatgaccaaat |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40440387 |
gattttgtgaatgttggatgaagctgataagaaagttatgtgaactccttgagaaaatagcttgttggataattgaacaaaaggacttatatgaccaaat |
40440288 |
T |
|
| Q |
411 |
gcaaggaatggaaacatgaacacatgaagttgatgatcattgttgttcatagccttcgaact |
472 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
40440287 |
gcaaggaatggaaacatgaacacatgaagttgatgatcattgttgttcatagcctttgaact |
40440226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 262 - 459
Target Start/End: Complemental strand, 40443459 - 40443262
Alignment:
| Q |
262 |
actgaagtggaataatttggatggatgggttgagattaagagtggatttgattttgtgaatgttggatgaagctgataagaaagttatgtgaactccttg |
361 |
Q |
| |
|
|||||||||| ||||| | |||||| | ||||||||||| || | ||||||| | ||||||| |||||||||||||||||||||| | ||||||| || |
|
|
| T |
40443459 |
actgaagtgggataatgttgatggacgagttgagattaaaagctgttttgattctaggaatgtttgatgaagctgataagaaagttacgcgaactccatg |
40443360 |
T |
|
| Q |
362 |
agaaaatagcttgttggataattgaacaaaaggacttatatgaccaaatgcaaggaatggaaacatgaacacatgaagttgatgatcattgttgttca |
459 |
Q |
| |
|
||| |||| ||||| |||||||||||||||||||| || ||||||||| |||||||||||||||||| |||||||||||| | |||||||||||||| |
|
|
| T |
40443359 |
agagaataatttgtttgataattgaacaaaaggactaatgtgaccaaatacaaggaatggaaacatgatcacatgaagttgcttatcattgttgttca |
40443262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 264 - 427
Target Start/End: Complemental strand, 21840169 - 21840006
Alignment:
| Q |
264 |
tgaagtggaataatttggatggatgggttgagattaagagtggatttgattttgtgaatgttggatgaagctgataagaaagttatgtgaactccttgag |
363 |
Q |
| |
|
||||| ||||| || ||||| || ||||||||||| | ||| ||||||||||| ||||||| | ||||| ||| ||||| | ||||||| ||| |||| |
|
|
| T |
21840169 |
tgaaggggaatgatatggattgaagggttgagattgaaagttgatttgatttttggaatgttagctgaaggtgacaagaatgagatgtgaattccatgag |
21840070 |
T |
|
| Q |
364 |
aaaatagcttgttggataattgaacaaaaggacttatatgaccaaatgcaaggaatggaaacat |
427 |
Q |
| |
|
| |||| ||||||||||||||| ||||| ||||| || ||||||||||| ||||| |||||||| |
|
|
| T |
21840069 |
agaataacttgttggataattgcacaaatggactaatgtgaccaaatgctaggaagggaaacat |
21840006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University