View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18671_low_6 (Length: 403)
Name: NF18671_low_6
Description: NF18671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18671_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 109 - 386
Target Start/End: Complemental strand, 48952160 - 48951883
Alignment:
| Q |
109 |
ggtgagctttgccactcgattccagcccaaaaagatgactaaaaatgatccaacattgagcaagaaatagcaaagtctagaaggtttagtgtccactagg |
208 |
Q |
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| T |
48952160 |
ggtgagctttgccactcgattccagcccaaaaagatgactaaaaatgatccaacattgggcaagaaatagcaaagtctagaaggtttagtgtccactagg |
48952061 |
T |
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| Q |
209 |
tcaattaaaaataacctgcctgcttcaattttcagacatcattcgtcatagcactattcacaatcaagnnnnnnnctctttacgtagacgatttccacat |
308 |
Q |
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| T |
48952060 |
tcaattaaaaataacctgcctgcttcaattttcagacatcattcgtcatagcactattcacaatcaagaaaaaaactctttacgtagacgatttccacat |
48951961 |
T |
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| Q |
309 |
actcctatcactgaataaaaaatagttgctttatctaaatgaaccaaacatgaaactgcttaaaatgatccactgtca |
386 |
Q |
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| T |
48951960 |
actcctatcactgaataaaaaatagttgctttatctaaatgaaccaaacatgaaactgcttaaaatgatccactgtca |
48951883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 48952268 - 48952229
Alignment:
| Q |
1 |
aagttttgtccttttaatgattactaagagaacatatatc |
40 |
Q |
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| T |
48952268 |
aagttttgtccttttaatgattactaagagaacatatatc |
48952229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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