View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18672_high_2 (Length: 628)

Name: NF18672_high_2
Description: NF18672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18672_high_2
NF18672_high_2
[»] chr4 (43 HSPs)
chr4 (1-607)||(12124467-12125073)
chr4 (1-506)||(12126523-12127028)
chr4 (9-490)||(2367603-2368081)
chr4 (3-490)||(2373167-2373653)
chr4 (298-415)||(2472032-2472149)
chr4 (58-107)||(5106634-5106683)
chr4 (56-168)||(2391278-2391390)
chr4 (327-415)||(2486276-2486364)
chr4 (304-420)||(2621158-2621274)
chr4 (530-582)||(12127052-12127104)
chr4 (58-160)||(2518912-2519014)
chr4 (58-168)||(2533992-2534102)
chr4 (58-160)||(2547223-2547325)
chr4 (58-164)||(2621426-2621532)
chr4 (361-406)||(1547467-1547512)
chr4 (530-602)||(2373055-2373127)
chr4 (304-404)||(2491074-2491174)
chr4 (541-599)||(2367494-2367552)
chr4 (361-415)||(2460600-2460654)
chr4 (422-488)||(2477695-2477761)
chr4 (127-168)||(2381650-2381691)
chr4 (61-161)||(2482462-2482562)
chr4 (368-413)||(2547542-2547587)
chr4 (445-494)||(2547613-2547662)
chr4 (58-107)||(5035301-5035350)
chr4 (441-490)||(5101954-5102003)
chr4 (539-596)||(12113818-12113875)
chr4 (61-101)||(2467224-2467264)
chr4 (58-102)||(2477262-2477306)
chr4 (125-168)||(2361222-2361265)
chr4 (42-97)||(2625589-2625644)
chr4 (327-398)||(5035591-5035662)
chr4 (48-82)||(641929-641963)
chr4 (70-100)||(2363162-2363192)
chr4 (361-415)||(2376235-2376289)
chr4 (441-487)||(2460674-2460720)
chr4 (58-156)||(2490807-2490905)
chr4 (300-398)||(2519175-2519273)
chr4 (441-490)||(2467679-2467728)
chr4 (58-107)||(2525434-2525483)
chr4 (441-490)||(2525945-2525994)
chr4 (446-490)||(5106226-5106270)
chr4 (304-404)||(5106327-5106427)
[»] chr1 (1 HSPs)
chr1 (283-413)||(15837967-15838097)
[»] chr5 (5 HSPs)
chr5 (298-404)||(39252916-39253022)
chr5 (361-413)||(32268773-32268825)
chr5 (58-101)||(28673354-28673397)
chr5 (58-107)||(39253184-39253233)
chr5 (70-102)||(28695603-28695635)
[»] chr8 (6 HSPs)
chr8 (41-102)||(18314718-18314779)
chr8 (360-415)||(39516859-39516914)
chr8 (51-91)||(14004068-14004108)
chr8 (51-91)||(32151893-32151933)
chr8 (361-413)||(32152209-32152261)
chr8 (298-402)||(34935764-34935868)
[»] chr3 (1 HSPs)
chr3 (280-322)||(37579635-37579677)
[»] chr6 (1 HSPs)
chr6 (368-404)||(6437159-6437195)


Alignment Details
Target: chr4 (Bit Score: 497; Significance: 0; HSPs: 43)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 1 - 607
Target Start/End: Original strand, 12124467 - 12125073
Alignment:
Q  1 tcatcatcatctagtataaaatcgtatttactaatattcatgggataactgaggtcaagttcttctagtaaagggaaacaatcagcaatgaagaagagat 100  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12124467 tcatcatcatctggtataaaatcgtattgactaatattcatgggataactgaggtcaagttcttctagtaaagggaaacaatcagcaatgaagaagagat 12124566  T
Q  101 cactctttagcatacaaatcattctggaacaagtgagaaaggtcaaatttttcatctttttggacaaaactaccaacacatctgcatcaaggtcaccttt 200  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12124567 cactctttagcatacaaatcattctggaacaagtgagagaggtcaaatttttcatctttttggacaaaactaccaacacatctgcatcaaggtcaccttt 12124666  T
Q  201 gttggaaatattgagcgatttgatgcctaatgggaaatattcattgtggccaagaagcaagtttatgttactagctttcgagaggtcgagggatctaagg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  12124667 gttggaaatattgagcgatttgatgcctaatgggaaatattcattgtggccaagaagcaagtttacgtttctagctttcgagaggtcgagggatctaagg 12124766  T
Q  301 ttggggaacctttggaagaggcggtcaaggaaagggattgtttcatcagagattgcgatggagaattggagacggttggtgatggagagaaattgtttgg 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  12124767 ttggggaacctttggaagaggcggtcaaggaaagggattgtttcatcagagattgcgatggaaaattggagacggttggtgatggagagaaattgtttgg 12124866  T
Q  401 agacaatggagagaggttccatgtagcagttggtgtcgcggtcgttgaggaatttgaagatgatctcccatatctcatctggtaaatatggacaagctac 500  Q
    ||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  12124867 agacaatggagagaggttccaagtagcagttggtgtcaccgtcgttgaggaatttgaagatgatctcccatatctcatctggtaaatatggacaagctgc 12124966  T
Q  501 tgccagnnnnnnnnnnnnnnnnnnnnnnactgcattggatttggaatatgcggctgcctccattacaagctattcaagcaaactacaacaccagtacaaa 600  Q
    ||||||                       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12124967 tgccagttttcgttctttagggtttttttctgcattggatttggaatatgcggctgcctccattacaagctattcaagcaaactacaacaccagtacaaa 12125066  T
Q  601 aatgata 607  Q
    |||||||    
T  12125067 aatgata 12125073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 506
Target Start/End: Original strand, 12126523 - 12127028
Alignment:
Q  1 tcatcatcatctagtataaaatcgtatttactaatattcatgggataactgaggtcaagttcttctagtaaagggaaacaatcagcaatgaagaagagat 100  Q
    ||||||||||||||| |||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||    
T  12126523 tcatcatcatctagtttaaaatcgtatttagtaaaattcatcggataactgaggtcaagttcttctagtaaagggcaacaatctgcaataaagaagagat 12126622  T
Q  101 cactctttagcatacaaatcattctggaacaagtgagaaaggtcaaatttttcatctttttggacaaaactaccaacacatctgcatcaaggtcaccttt 200  Q
    |||||||| | |||| || ||||| ||||||| ||||| |||||||||||||||||| ||||||||||| ||||| ||||||| ||| || | |||||||    
T  12126623 cactcttttgaatactaaacattccggaacaaatgagagaggtcaaatttttcatctgtttggacaaaagtaccatcacatctccatgaatgccaccttt 12126722  T
Q  201 gttggaaatattgagcgatttgatgcctaatgggaaatattcattgtggccaagaagcaagtttatgttactagctttcgagaggtcgagggatctaagg 300  Q
    |||||||| |||||| |||||||||||||| ||||||| |||| || ||| |||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  12126723 gttggaaaaattgagagatttgatgcctaaagggaaatcttcagtgcggcaaagaagcaagtttaggtttctagctttcgagaggtcgagggatctaagg 12126822  T
Q  301 ttggggaacctttggaagaggcggtcaaggaaagggattgtttcatcagagattgcgatggagaattggagacggttggtgatggagagaaattgtttgg 400  Q
    ||||||||||||| ||| ||||||||||||||||||||| ||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  12126823 ttggggaaccttttgaataggcggtcaaggaaagggattttttcatctgagactgcgatggagaataggagacggttggtgatggagagaaattgtttgg 12126922  T
Q  401 agacaatggagagaggttccatgtagcagttggtgtcgcggtcgttgaggaatttgaagatgatctcccatatctcatctggtaaatatggacaagctac 500  Q
    ||||||||||||||||||  |  |||||||||||| ||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||| |    
T  12126923 agacaatggagagaggttttaaatagcagttggtgacgccgtcgttgaggaatttgaagatgatctcccataactcatcaggtaaatatggacatgctgc 12127022  T
Q  501 tgccag 506  Q
    ||||||    
T  12127023 tgccag 12127028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 9 - 490
Target Start/End: Complemental strand, 2368081 - 2367603
Alignment:
Q  9 atctagtataaaatcgtatttactaatattcatgggataactgaggtcaagttcttctagtaaagggaaacaatcagcaatgaagaagagatcactcttt 108  Q
    ||||||| ||||||| |||||||||  || |||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||     
T  2368081 atctagtctaaaatcatatttactacaatacatgggataactgatgtcgagttcttcgagtaaagggaaacaatcagcaatgaagaagagatcactcttg 2367982  T
Q  109 agcatacaaatcattctggaacaagtgagaaaggtcaaatttttcatctttttggacaaaactaccaacacatctgcatcaaggtcacctttgttggaaa 208  Q
     | |||| |||||||| ||||||||| ||| ||||||| ||||||||| |||||||||| | |  ||||  || || || || |   || | ||||||||    
T  2367981 tgaatactaatcattccggaacaagtaagagaggtcaagtttttcatccttttggacaacaattgcaacttatgtgtatgaatg---ccgtggttggaaa 2367885  T
Q  209 tattgagcgatttgatgcctaatgggaaatattcattgtggccaagaagcaagtttatgttactagctttcgagaggtcgagggatctaaggttggggaa 308  Q
     ||||||||||||||||  ||| |||||||  ||| |||||   | || |||||| | ||| ||| |||| |||| |||||||||| | |||||||||||    
T  2367884 cattgagcgatttgatgtttaaagggaaattgtcaatgtggtagacaaacaagttaaggtttctaccttttgagaagtcgagggatgtgaggttggggaa 2367785  T
Q  309 cctttggaagaggcggtcaaggaaagggattgtttcatcagagattgcgatggagaattggagacggttggtgatggagagaaattgtttggagacaatg 408  Q
    ||||||||| ||||| | ||||||||||||||||| ||| || ||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||    
T  2367784 cctttggaaaaggcgataaaggaaagggattgttttatcggacattgctatggagaatcggagacggttggtgatggagagaaattgtttggagacgatg 2367685  T
Q  409 gagagaggttccatgtagcagttggtgtcgcggtcgttgaggaatttgaagatgatctcccatatctcatctggtaaatatg 490  Q
    || |||||||||| ||||| |||| |||||| ||||||||| |||||||||||||||||||||| |||||||| ||||||||    
T  2367684 gaaagaggttccaagtagcggttgttgtcgctgtcgttgagaaatttgaagatgatctcccataactcatctgttaaatatg 2367603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 3 - 490
Target Start/End: Complemental strand, 2373653 - 2373167
Alignment:
Q  3 atcatcatctagtataaaatcgtatttactaatattcatgggataactgaggtcaagttcttctagtaaagggaaacaatcagcaatgaagaagagatca 102  Q
    ||||| ||||||||||||||| || ||||||  ||||||||||||||| | |||||||||||| || |||||||||||||||||||||||||||||||||    
T  2373653 atcataatctagtataaaatcatacttactacgattcatgggataactcaagtcaagttcttcgagcaaagggaaacaatcagcaatgaagaagagatca 2373554  T
Q  103 ctctttagcatacaaatcattctggaacaagtgagaaaggtcaaatttttcatctttttggacaaaactaccaacacatctgcatcaaggtcacctttgt 202  Q
    |||||  | | || | ||||||   ||||||||||| ||||||||| ||||||||||| |||||||| |||||||  | ||  || || |||||| ||||    
T  2373553 ctcttgtgaacactattcattccaaaacaagtgagagaggtcaaatatttcatcttttcggacaaaattaccaacgtacctatatgaatgtcaccattgt 2373454  T
Q  203 tggaaatattgagcgatttgatgcctaatgggaaatattcattgtggccaagaagcaagtttatgttactagctttcgagaggtcgagggatctaaggtt 302  Q
    |||||| |||||| ||||||| |  | | ||||||| |||  ||||||  ||||||||||| | ||| ||| |||| ||||||||||||||  | |||||    
T  2373453 tggaaaaattgagtgatttgaagtttgaagggaaatcttcggtgtggcagagaagcaagttgaggtttctaccttttgagaggtcgagggaggtgaggtt 2373354  T
Q  303 ggggaacctttggaagaggcggtcaaggaaagggattgtttcatcagagattgcgatggagaattggagacggttggtgatggagagaaattgtttggag 402  Q
    ||||||||||||||||||||| | ||||||||| ||||||| ||| || ||||| ||||||||| ||||| | ||||||||||||||||||||||||||     
T  2373353 ggggaacctttggaagaggcgattaaggaaaggaattgttttatc-gacattgctatggagaatcggagatgattggtgatggagagaaattgtttggaa 2373255  T
Q  403 acaatggagagaggttccatgtagcagttggtgtcgcggtcgttgaggaatttgaagatgatctcccatatctcatctggtaaatatg 490  Q
    |||| |||||||||||| | ||||| | || ||| || ||||||||| ||||||||||||||||||||||  ||||||| ||||||||    
T  2373254 acaacggagagaggttcgaagtagcggctgttgttgccgtcgttgagaaatttgaagatgatctcccataattcatctgttaaatatg 2373167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 298 - 415
Target Start/End: Original strand, 2472032 - 2472149
Alignment:
Q  298 aggttggggaacctttggaagaggcggtcaaggaaagggattgtttcatcag-agattgcgatggagaattggagacggttggtgatggagagaaattgt 396  Q
    ||||| |||||||||| ||||||| | | ||||||||||||||||||| ||| |||||| || |||||||  |||||| ||||||||||||| ||| |||    
T  2472032 aggttagggaacctttcgaagaggtgatgaaggaaagggattgtttca-cagtagattgtgagggagaatcagagacgattggtgatggagaaaaactgt 2472130  T
Q  397 ttggagacaatggagagag 415  Q
    |||||||| ||||| ||||    
T  2472131 ttggagaccatggaaagag 2472149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 58 - 107
Target Start/End: Complemental strand, 5106683 - 5106634
Alignment:
Q  58 agttcttctagtaaagggaaacaatcagcaatgaagaagagatcactctt 107  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  5106683 agttcttcgagtaaagggaaacaatcagcaatgaagaagagatcactctt 5106634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 56 - 168
Target Start/End: Complemental strand, 2391390 - 2391278
Alignment:
Q  56 caagttcttctagtaaagggaaacaatcagcaatgaagaagagatcactctttagcatacaaatcattctggaacaagtgagaaaggtcaaatttttcat 155  Q
    |||||||||| ||||||||||| |||||| |||||||||||| |||  ||||    || ||||  | |  ||||||||| ||| ||||||||||||||||    
T  2391390 caagttcttcgagtaaagggaagcaatcaacaatgaagaagatatccttcttgttgatccaaaaaaattcggaacaagtaagagaggtcaaatttttcat 2391291  T
Q  156 ctttttggacaaa 168  Q
    |||||||||||||    
T  2391290 ctttttggacaaa 2391278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 327 - 415
Target Start/End: Original strand, 2486276 - 2486364
Alignment:
Q  327 aaggaaagggattgtttcatcagagattgcgatggagaattggagacggttggtgatggagagaaattgtttggagacaatggagagag 415  Q
    |||||||||||||||||  || ||||||| ||  |||||| ||||||||||||||||||| ||||| ||||| ||||| | ||||||||    
T  2486276 aaggaaagggattgttttctcggagattgtgaccgagaatcggagacggttggtgatggacagaaactgttttgagacgagggagagag 2486364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 304 - 420
Target Start/End: Complemental strand, 2621274 - 2621158
Alignment:
Q  304 gggaacctttggaagaggcggtcaaggaaagggattgtttcatcagagattgcgatggagaattggagacggttggtgatggagagaaattgtttggaga 403  Q
    |||||||| | |||||||||   || ||||||||| |||| ||| ||||||| |||||||||  | ||||||||||||||||| | ||| |||||||| |    
T  2621274 gggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttggata 2621175  T
Q  404 caatggagagaggttcc 420  Q
    | | |||||||||||||    
T  2621174 cgagggagagaggttcc 2621158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 530 - 582
Target Start/End: Original strand, 12127052 - 12127104
Alignment:
Q  530 ctgcattggatttggaatatgcggctgcctccattacaagctattcaagcaaa 582  Q
    |||||||||| |||||||||||||||||||||||||| ||| |||||||||||    
T  12127052 ctgcattggaattggaatatgcggctgcctccattacgagcaattcaagcaaa 12127104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 160
Target Start/End: Original strand, 2518912 - 2519014
Alignment:
Q  58 agttcttctagtaaagggaaacaatcagcaatgaagaagagatcactctttagcatacaaatcattctggaacaagtgagaaaggtcaaatttttcatct 157  Q
    |||||||  |||||||||||||||||||||||||||||||||||| ||||  | ||| |  |||||    ||||||||||| | |||||||||||||| |    
T  2518912 agttctttgagtaaagggaaacaatcagcaatgaagaagagatcattcttgtggatatatttcatttaataacaagtgagatatgtcaaatttttcatgt 2519011  T
Q  158 ttt 160  Q
    |||    
T  2519012 ttt 2519014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 168
Target Start/End: Original strand, 2533992 - 2534102
Alignment:
Q  58 agttcttctagtaaagggaaacaatcagcaatgaagaagagatcactctttagcatacaaatcattctggaacaagtgagaaaggtcaaatttttcatct 157  Q
    |||||||| ||||||||||||||||||||||| |||||||||||| ||||    ||| |  |||||    ||||||||||| | || |||||||||||||    
T  2533992 agttcttcaagtaaagggaaacaatcagcaatcaagaagagatcattcttgttgatatagctcatttgataacaagtgagagatgttaaatttttcatct 2534091  T
Q  158 ttttggacaaa 168  Q
    | |||||||||    
T  2534092 tcttggacaaa 2534102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 160
Target Start/End: Original strand, 2547223 - 2547325
Alignment:
Q  58 agttcttctagtaaagggaaacaatcagcaatgaagaagagatcactctttagcatacaaatcattctggaacaagtgagaaaggtcaaatttttcatct 157  Q
    |||||||| ||||||||||||||||||||||||||||| | |||| ||||    ||| |  | ||| |||||||| ||||| | ||||||||||||||||    
T  2547223 agttcttcaagtaaagggaaacaatcagcaatgaagaataaatcattcttgctgataaaggtgattttggaacaaatgagagacgtcaaatttttcatct 2547322  T
Q  158 ttt 160  Q
    |||    
T  2547323 ttt 2547325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 164
Target Start/End: Complemental strand, 2621532 - 2621426
Alignment:
Q  58 agttcttctagtaaagggaaacaatcagcaatgaagaagagatcactctttagcatacaaatcattctggaacaagtgagaaaggtcaaatttttcatct 157  Q
    |||||||| |||||||||||||||||||||| |||||| |||||| ||||  | ||   | | |||| | ||||||||||| | |||||||||||||| |    
T  2621532 agttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttgcggattttattaattcggtaacaagtgagagatgtcaaatttttcatat 2621433  T
Q  158 ttttgga 164  Q
    |||||||    
T  2621432 ttttgga 2621426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 361 - 406
Target Start/End: Complemental strand, 1547512 - 1547467
Alignment:
Q  361 gagaattggagacggttggtgatggagagaaattgtttggagacaa 406  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||    
T  1547512 gagaatcggagacggttggtgatggagaggaattgtttggagacaa 1547467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 530 - 602
Target Start/End: Complemental strand, 2373127 - 2373055
Alignment:
Q  530 ctgcattggatttggaatatgcggctgcctccattacaagctattcaagcaaactacaacaccagtacaaaaa 602  Q
    |||||||  |||||||| ||| ||||||||||||||| ||| | ||||||||||| ||||||||| |||||||    
T  2373127 ctgcattacatttggaagatgtggctgcctccattacgagcaactcaagcaaactgcaacaccagaacaaaaa 2373055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 304 - 404
Target Start/End: Original strand, 2491074 - 2491174
Alignment:
Q  304 gggaacctttggaagaggcggtcaaggaaagggattgtttcatcagagattgcgatggagaattggagacggttggtgatggagagaaattgtttggaga 403  Q
    ||||||||||  ||||| || | |||||||||||||||| |||| ||||||| ||  || ||| |||||||||| |||||||| ||||| ||||| ||||    
T  2491074 gggaacctttcaaagagacgattaaggaaagggattgttgcatcggagattgtgaccgaaaatcggagacggtttgtgatggacagaaactgttttgaga 2491173  T
Q  404 c 404  Q
    |    
T  2491174 c 2491174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 541 - 599
Target Start/End: Complemental strand, 2367552 - 2367494
Alignment:
Q  541 ttggaatatgcggctgcctccattacaagctattcaagcaaactacaacaccagtacaa 599  Q
    |||||| |||||||| |||||||||| ||| | ||||||||||| ||||||||||||||    
T  2367552 ttggaagatgcggcttcctccattacgagcgactcaagcaaactgcaacaccagtacaa 2367494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 415
Target Start/End: Original strand, 2460600 - 2460654
Alignment:
Q  361 gagaattggagacggttggtgatggagagaaattgtttggagacaatggagagag 415  Q
    |||||| ||||||| |||||||||||||| || ||||||||||| ||||||||||    
T  2460600 gagaatcggagacgattggtgatggagaggaactgtttggagaccatggagagag 2460654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 422 - 488
Target Start/End: Original strand, 2477695 - 2477761
Alignment:
Q  422 tgtagcagttggtgtcgcggtcgttgaggaatttgaagatgatctcccatatctcatctggtaaata 488  Q
    ||||| ||||| |||||| ||||||||||||||||||||||  |||||| | ||| |||||||||||    
T  2477695 tgtagaagttgttgtcgccgtcgttgaggaatttgaagatgccctcccacaactcctctggtaaata 2477761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 127 - 168
Target Start/End: Complemental strand, 2381691 - 2381650
Alignment:
Q  127 gaacaagtgagaaaggtcaaatttttcatctttttggacaaa 168  Q
    |||||||| ||| |||||||||||||||||||||||||||||    
T  2381691 gaacaagtaagagaggtcaaatttttcatctttttggacaaa 2381650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 61 - 161
Target Start/End: Original strand, 2482462 - 2482562
Alignment:
Q  61 tcttctagtaaagggaaacaatcagcaatgaagaagagatcactcttta-gcatacaaatcattctggaacaagtgagaaaggtcaaatttttcatcttt 159  Q
    ||||||||||||||||| |||||||||||||  ||||  ||| |||||| | | | ||  |||| |||||||||||||| | ||||||||||||||||||    
T  2482462 tcttctagtaaagggaagcaatcagcaatgagaaagatgtca-tctttacggagaaaacccattgtggaacaagtgagagatgtcaaatttttcatcttt 2482560  T
Q  160 tt 161  Q
    ||    
T  2482561 tt 2482562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 368 - 413
Target Start/End: Original strand, 2547542 - 2547587
Alignment:
Q  368 ggagacggttggtgatggagagaaattgtttggagacaatggagag 413  Q
    ||||||||||||||||||| ||||| ||||||||||| ||||||||    
T  2547542 ggagacggttggtgatggacagaaactgtttggagacgatggagag 2547587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 445 - 494
Target Start/End: Original strand, 2547613 - 2547662
Alignment:
Q  445 ttgaggaatttgaagatgatctcccatatctcatctggtaaatatggaca 494  Q
    ||||||||||||||||||  |||||||| ||||||||||||||| |||||    
T  2547613 ttgaggaatttgaagatgtgctcccataactcatctggtaaatagggaca 2547662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 58 - 107
Target Start/End: Original strand, 5035301 - 5035350
Alignment:
Q  58 agttcttctagtaaagggaaacaatcagcaatgaagaagagatcactctt 107  Q
    |||||||| ||||||||||||||||||||||| ||||| |||||| ||||    
T  5035301 agttcttcgagtaaagggaaacaatcagcaatcaagaaaagatcattctt 5035350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 441 - 490
Target Start/End: Complemental strand, 5102003 - 5101954
Alignment:
Q  441 gtcgttgaggaatttgaagatgatctcccatatctcatctggtaaatatg 490  Q
    ||||||||||||||||||||||  |||||||| |||||| ||||||||||    
T  5102003 gtcgttgaggaatttgaagatgcgctcccataactcatccggtaaatatg 5101954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 539 - 596
Target Start/End: Original strand, 12113818 - 12113875
Alignment:
Q  539 atttggaatatgcggctgcctccattacaagctattcaagcaaactacaacaccagta 596  Q
    |||||| ||| | ||||||||||||||| ||| ||||||||||||| |||||||||||    
T  12113818 atttgggataagtggctgcctccattacgagcaattcaagcaaactgcaacaccagta 12113875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 61 - 101
Target Start/End: Original strand, 2467224 - 2467264
Alignment:
Q  61 tcttctagtaaagggaaacaatcagcaatgaagaagagatc 101  Q
    ||||| ||||||||||||||||||||||||||||| |||||    
T  2467224 tcttcgagtaaagggaaacaatcagcaatgaagaaaagatc 2467264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 58 - 102
Target Start/End: Original strand, 2477262 - 2477306
Alignment:
Q  58 agttcttctagtaaagggaaacaatcagcaatgaagaagagatca 102  Q
    ||||||||||| ||||||||||||| || ||||||||||||||||    
T  2477262 agttcttctagcaaagggaaacaattagaaatgaagaagagatca 2477306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 168
Target Start/End: Complemental strand, 2361265 - 2361222
Alignment:
Q  125 tggaacaagtgagaaaggtcaaatttttcatctttttggacaaa 168  Q
    |||||||||||||| | |||||||||||||| ||||||||||||    
T  2361265 tggaacaagtgagagatgtcaaatttttcatttttttggacaaa 2361222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 2625644 - 2625589
Alignment:
Q  42 gggataactgaggtcaagttcttctagtaaagggaaacaatcagcaatgaagaaga 97  Q
    ||||||| ||||||  |||||||| |||||||||||||||||| |||| |||||||    
T  2625644 gggataagtgaggttgagttcttcgagtaaagggaaacaatcaacaataaagaaga 2625589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 398
Target Start/End: Original strand, 5035591 - 5035662
Alignment:
Q  327 aaggaaagggattgtttcatcagagattgcgatggagaattggagacggttggtgatggagagaaattgttt 398  Q
    |||||||||||||||| | |||||||||  ||   ||||| | ||||||||||||||||||||||| |||||    
T  5035591 aaggaaagggattgttgcctcagagattttgaccaagaatcgaagacggttggtgatggagagaaactgttt 5035662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 48 - 82
Target Start/End: Original strand, 641929 - 641963
Alignment:
Q  48 actgaggtcaagttcttctagtaaagggaaacaat 82  Q
    |||||||||||||||||| ||||||||||||||||    
T  641929 actgaggtcaagttcttcgagtaaagggaaacaat 641963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 70 - 100
Target Start/End: Complemental strand, 2363192 - 2363162
Alignment:
Q  70 aaagggaaacaatcagcaatgaagaagagat 100  Q
    |||||||||||||||||||||||||||||||    
T  2363192 aaagggaaacaatcagcaatgaagaagagat 2363162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 361 - 415
Target Start/End: Complemental strand, 2376289 - 2376235
Alignment:
Q  361 gagaattggagacggttggtgatggagagaaattgtttggagacaatggagagag 415  Q
    |||||| ||| |||||||||||||||||||||   ||||||||| ||||||||||    
T  2376289 gagaatcggaaacggttggtgatggagagaaaagttttggagacgatggagagag 2376235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 441 - 487
Target Start/End: Original strand, 2460674 - 2460720
Alignment:
Q  441 gtcgttgaggaatttgaagatgatctcccatatctcatctggtaaat 487  Q
    ||||| |||||||||||||||| |||||||||| || ||||||||||    
T  2460674 gtcgtcgaggaatttgaagatgctctcccatatttcctctggtaaat 2460720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 58 - 156
Target Start/End: Original strand, 2490807 - 2490905
Alignment:
Q  58 agttcttctagtaaagggaaacaatcagcaatgaagaagagatcactctttagcatacaaatcattctggaacaagtgagaaaggtcaaatttttcatc 156  Q
    ||||| || ||||||||||||||||||||||| || ||||||||| ||||    ||| |  ||||||   ||||||||||| | |||||||||||||||    
T  2490807 agttcgtcgagtaaagggaaacaatcagcaataaaaaagagatcattcttgttgataaacctcattcgataacaagtgagagatgtcaaatttttcatc 2490905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 300 - 398
Target Start/End: Original strand, 2519175 - 2519273
Alignment:
Q  300 gttggggaacctttggaagaggcggtcaaggaaagggattgtttcatcagagattgcgatggagaattggagacggttggtgatggagagaaattgttt 398  Q
    |||||||||||| |  ||||| || | ||||||||||||||||| ||| ||||||| ||  ||| || | | ||||||||||||||| ||||| |||||    
T  2519175 gttggggaacctatcaaagagacgatgaaggaaagggattgtttgatctgagattgtgactgaggatcgaaaacggttggtgatggacagaaactgttt 2519273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 490
Target Start/End: Original strand, 2467679 - 2467728
Alignment:
Q  441 gtcgttgaggaatttgaagatgatctcccatatctcatctggtaaatatg 490  Q
    ||||||||||||||||||||||  |||||||| ||| | |||||||||||    
T  2467679 gtcgttgaggaatttgaagatgcgctcccataactcctttggtaaatatg 2467728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 107
Target Start/End: Original strand, 2525434 - 2525483
Alignment:
Q  58 agttcttctagtaaagggaaacaatcagcaatgaagaagagatcactctt 107  Q
    |||||||| |||| |||||||||||||||||||||||  |||||| ||||    
T  2525434 agttcttcgagtagagggaaacaatcagcaatgaagagcagatcattctt 2525483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 490
Target Start/End: Original strand, 2525945 - 2525994
Alignment:
Q  441 gtcgttgaggaatttgaagatgatctcccatatctcatctggtaaatatg 490  Q
    ||||||||||||||||||||||   ||||||| ||| |||||||||||||    
T  2525945 gtcgttgaggaatttgaagatgtgttcccataactcctctggtaaatatg 2525994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 446 - 490
Target Start/End: Complemental strand, 5106270 - 5106226
Alignment:
Q  446 tgaggaatttgaagatgatctcccatatctcatctggtaaatatg 490  Q
    |||||||||||||||||  |||||||| |||||| ||||||||||    
T  5106270 tgaggaatttgaagatgccctcccataactcatccggtaaatatg 5106226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 304 - 404
Target Start/End: Complemental strand, 5106427 - 5106327
Alignment:
Q  304 gggaacctttggaagaggcggtcaaggaaagggattgtttcatcagagattgcgatggagaattggagacggttggtgatggagagaaattgtttggaga 403  Q
    |||||||||| ||||||||| | || ||||||||| |||| || || ||||| ||  |||||| |  |||||||||||||||| | ||| ||||| ||||    
T  5106427 gggaaccttttgaagaggcgatgaatgaaagggatggtttgattagtgattgtgaccgagaatcgaggacggttggtgatggacaaaaactgttttgaga 5106328  T
Q  404 c 404  Q
    |    
T  5106327 c 5106327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 283 - 413
Target Start/End: Complemental strand, 15838097 - 15837967
Alignment:
Q  283 aggtcgagggatctaaggttggggaacctttggaagaggcggtcaaggaaagggattgtttcatcagagattgcgatggagaattggagacggttggtga 382  Q
    |||||||| ||| | ||||| ||||||||||||||||||     || |||||||||||||| |||   ||||  || ||||||| |||||||||||||||    
T  15838097 aggtcgagagatgttaggttagggaacctttggaagaggttaggaatgaaagggattgtttgatctatgattttgagggagaatcggagacggttggtga 15837998  T
Q  383 tggagagaaattgtttggagacaatggagag 413  Q
    |||||||||| ||||||||||| || |||||    
T  15837997 tggagagaaactgtttggagaccatcgagag 15837967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 298 - 404
Target Start/End: Complemental strand, 39253022 - 39252916
Alignment:
Q  298 aggttggggaacctttggaagaggcggtcaaggaaagggattgtttcatcagagattgcgatggagaattggagacggttggtgatggagagaaattgtt 397  Q
    ||||||||||||||||  |||||  |   |||| |||||||||||| ||| | |||||||| |||| || ||||||||||| ||||||||||||| |||     
T  39253022 aggttggggaacctttcaaagagaagaggaagggaagggattgtttgatcggtgattgcgagggaggatcggagacggttgctgatggagagaaactgta 39252923  T
Q  398 tggagac 404  Q
    |||||||    
T  39252922 tggagac 39252916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 361 - 413
Target Start/End: Original strand, 32268773 - 32268825
Alignment:
Q  361 gagaattggagacggttggtgatggagagaaattgtttggagacaatggagag 413  Q
    |||||| | |||||||||||||||||||| || ||||||||||| ||||||||    
T  32268773 gagaatcgaagacggttggtgatggagagtaactgtttggagacgatggagag 32268825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 101
Target Start/End: Complemental strand, 28673397 - 28673354
Alignment:
Q  58 agttcttctagtaaagggaaacaatcagcaatgaagaagagatc 101  Q
    |||||||| || |||||||| |||||||||||||||||||||||    
T  28673397 agttcttcgagcaaagggaagcaatcagcaatgaagaagagatc 28673354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 107
Target Start/End: Complemental strand, 39253233 - 39253184
Alignment:
Q  58 agttcttctagtaaagggaaacaatcagcaatgaagaagagatcactctt 107  Q
    |||||||| ||||||| ||||||||| ||||||| ||| |||||||||||    
T  39253233 agttcttcaagtaaagagaaacaatccgcaatgatgaatagatcactctt 39253184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 70 - 102
Target Start/End: Complemental strand, 28695635 - 28695603
Alignment:
Q  70 aaagggaaacaatcagcaatgaagaagagatca 102  Q
    |||||||| ||||||||||||||||||||||||    
T  28695635 aaagggaagcaatcagcaatgaagaagagatca 28695603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 41 - 102
Target Start/End: Complemental strand, 18314779 - 18314718
Alignment:
Q  41 tgggataactgaggtcaagttcttctagtaaagggaaacaatcagcaatgaagaagagatca 102  Q
    |||| ||||| ||||| |||||||| || |||||||||||||||||||||| ||||||||||    
T  18314779 tggggtaactaaggtcgagttcttcgagcaaagggaaacaatcagcaatgaggaagagatca 18314718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 360 - 415
Target Start/End: Original strand, 39516859 - 39516914
Alignment:
Q  360 ggagaattggagacggttggtgatggagagaaattgtttggagacaatggagagag 415  Q
    |||||||  ||||||||||||||||| |||||||||| ||||||| ||||||||||    
T  39516859 ggagaatctgagacggttggtgatggcgagaaattgtctggagacgatggagagag 39516914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 51 - 91
Target Start/End: Original strand, 14004068 - 14004108
Alignment:
Q  51 gaggtcaagttcttctagtaaagggaaacaatcagcaatga 91  Q
    |||||| ||||||||||| ||||| ||||||||||||||||    
T  14004068 gaggtcgagttcttctagcaaaggaaaacaatcagcaatga 14004108  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 51 - 91
Target Start/End: Original strand, 32151893 - 32151933
Alignment:
Q  51 gaggtcaagttcttctagtaaagggaaacaatcagcaatga 91  Q
    ||||||||||||||| || |||||||||||||| |||||||    
T  32151893 gaggtcaagttcttcgagcaaagggaaacaatcggcaatga 32151933  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 361 - 413
Target Start/End: Original strand, 32152209 - 32152261
Alignment:
Q  361 gagaattggagacggttggtgatggagagaaattgtttggagacaatggagag 413  Q
    |||||| |||||| ||||||||||||||| || ||||||||||| | ||||||    
T  32152209 gagaatcggagactgttggtgatggagaggaactgtttggagacgagggagag 32152261  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 298 - 402
Target Start/End: Complemental strand, 34935868 - 34935764
Alignment:
Q  298 aggttggggaacctttggaagaggcggtcaaggaaagggattgtttcatcagagattgcgatggagaattggagacggttggtgatggagagaaattgtt 397  Q
    |||||||  |||||||||||||||||   |||| ||||||  |||| |||||| || | ||  ||||||| | |||||||||||| |||||| || ||||    
T  34935868 aggttggtaaacctttggaagaggcgaggaagggaagggagggtttgatcagaaatagtgagagagaatttgtgacggttggtgacggagaggaagtgtt 34935769  T
Q  398 tggag 402  Q
    |||||    
T  34935768 tggag 34935764  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 280 - 322
Target Start/End: Complemental strand, 37579677 - 37579635
Alignment:
Q  280 gagaggtcgagggatctaaggttggggaacctttggaagaggc 322  Q
    ||||||||||||||| | ||||| |||||||||||||||||||    
T  37579677 gagaggtcgagggatttgaggtttgggaacctttggaagaggc 37579635  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 368 - 404
Target Start/End: Original strand, 6437159 - 6437195
Alignment:
Q  368 ggagacggttggtgatggagagaaattgtttggagac 404  Q
    |||||||||||||||||||||| || |||||||||||    
T  6437159 ggagacggttggtgatggagaggaactgtttggagac 6437195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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