View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18672_high_4 (Length: 430)
Name: NF18672_high_4
Description: NF18672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18672_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 345; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 15 - 414
Target Start/End: Original strand, 558225 - 558625
Alignment:
| Q |
15 |
aagtgactaaaatgttttatataagacagctttgcaccacattcgttgaaattttgacacagtaattccccggagttatcctcaaccacgctaatcaatt |
114 |
Q |
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| T |
558225 |
aagtgactaaaatgttttatataagacagctttgcaccacattcgttgaaattttgacacaataattccccggagttatcctcaaccacgctaatcaatt |
558324 |
T |
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| Q |
115 |
ttcgacatcatcctcgttcacttctcgttggtgttcccacaaaattacattacattttcaagtagnnnnnnnn-ttacattttcaagtaacaaaatcttg |
213 |
Q |
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| T |
558325 |
ttcgacatcatcctcgttcacttctcattggtgttcccacaaaattacattacattttcatgtagaaaaaaaaattacattttcaagtaacaaaatcttg |
558424 |
T |
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| Q |
214 |
tatttcagtctaggtttaaactaaaggacatgctcaactctcctaaagcaactcaaaatgttgcaaaaagaatcatctctaaaggttcattagaagagtc |
313 |
Q |
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| T |
558425 |
tatttcagtctaggtttaaactaaaggacatgctcaactctcctaaagcaactcaaaatgttgcaaaaagaatcatcaataaaggttcattagaagagtc |
558524 |
T |
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| Q |
314 |
aacaaatgtttttgttgttgacataaaagagaaaattacacatatgatgtcaacttgtagaacaaatgaaaatcacttttagttcctcatcttcttcata |
413 |
Q |
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| T |
558525 |
aacaaatgtttttgttgttgacataaaagagaaaattacacatatgatgtcaacttgtagaacaaatgaaaatcacttttagttcctcatgttcttcata |
558624 |
T |
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| Q |
414 |
c |
414 |
Q |
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| T |
558625 |
c |
558625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 192 - 261
Target Start/End: Original strand, 560064 - 560132
Alignment:
| Q |
192 |
attttcaagtaacaaaatcttgtatttcagtctaggtttaaactaaaggacatgctcaactctcctaaag |
261 |
Q |
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| T |
560064 |
attttcaagtaacaaagtcttgtatttcaatctaggtttaagctaaa-gccatgctcagctctcctaaag |
560132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 287
Target Start/End: Original strand, 555718 - 555771
Alignment:
| Q |
234 |
ctaaaggacatgctcaactctcctaaagcaactcaaaatgttgcaaaaagaatc |
287 |
Q |
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| T |
555718 |
ctaaaggatatgctcaggtctcataaagtaactcaaaatgttacaaaaagaatc |
555771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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