View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18672_high_6 (Length: 394)
Name: NF18672_high_6
Description: NF18672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18672_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 11 - 376
Target Start/End: Original strand, 8813964 - 8814329
Alignment:
| Q |
11 |
cacagaatatgctctttatggctgcgtcaaacctgccaaagtcgttgctgccacatcctatggaaataaacctatcatcgtcgcctcatttaactgtaca |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
8813964 |
cacagaatatgctctttatggctgcgtcaaacctgccaaagtcgttgctgccacatcctatggaaataaacctatcatcgtcgcctcatttaactgtaaa |
8814063 |
T |
|
| Q |
111 |
ggagaagaacaactggtagtgttcaaatgcggcgatgagaattggaagtttattcctgaaatgtcagtctactttggagatatccgtgctttcaaaggtc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8814064 |
ggagaagaacaactggtagtgttcaaatgcggcgatgagaattggaagtttattcctgaaatgtcagtctactttggagatatccgtgctttcaaaggtc |
8814163 |
T |
|
| Q |
211 |
agtgttatgtggtagacaaaactggacagactgttactgttggaccgtatgactcaactgttcagttagtggctgaatctttgcttgctggcggggatat |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8814164 |
agtgttatgtggtagacaaaactggacagactgttactgttggaccggatgactcaactgttcagttagtggctgaatctttgcttgctggcggggatat |
8814263 |
T |
|
| Q |
311 |
taaattcctagttgagagcaagggtgatttgttgttagcagatgtttacgaccgtgagattgatga |
376 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
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| T |
8814264 |
taaattcctagtggagagcaagggtgatttgttgttagcagatgtttacaaccgtgatattgatga |
8814329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 126 - 359
Target Start/End: Original strand, 251117 - 251356
Alignment:
| Q |
126 |
gtagtgttcaaatgcggcgatgagaattggaagtttattcctgaaatgtcagtctactttggagatatccgtgctttcaaaggtcagtgttatgtggtag |
225 |
Q |
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||||||||||||||||| ||||||||||||||| ||| ||| | ||||| | || |||||||| || ||| ||||||||| | ||||| ||||| |
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| T |
251117 |
gtagtgttcaaatgcggtgatgagaattggaaggctatacctaacatgtcggcttattttggagacatttgtgttttcaaaggccgaccttatgcggtag |
251216 |
T |
|
| Q |
226 |
acaaaactggacagactgttactgttg------gaccgtatgactcaactgttcagttagtggctgaatctttgcttgctggcggggatattaaattcct |
319 |
Q |
| |
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|||| ||||||| ||| |||||||||| |||| | || || ||||| |||||||||||| |||||||| ||| ||| || |||||||||||| | |
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| T |
251217 |
acaatactggacggacagttactgttgaacttggacctgaggattccactgtccagttagtggctcaatctttggttggtggtggagatattaaattctt |
251316 |
T |
|
| Q |
320 |
agttgagagcaagggtgatttgttgttagcagatgtttac |
359 |
Q |
| |
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|| |||||| | |||||||||||||||||||||||||| |
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| T |
251317 |
ggtggagagcgacagtgatttgttgttagcagatgtttac |
251356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 130 - 361
Target Start/End: Complemental strand, 247253 - 247019
Alignment:
| Q |
130 |
tgttcaaatgcggcgatgagaattggaagtttattcctgaaatgtcagtctactttggagatatccgtgctttcaaaggtcagtgttatgtggtagacaa |
229 |
Q |
| |
|
|||| |||||||| ||||||||||||||| ||| ||| | ||||| || || || ||||| || ||| ||||||||| | ||||| ||||||||| |
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| T |
247253 |
tgttgaaatgcggtgatgagaattggaaggctatacctcacatgtcggtttatttaggagacatttgtgttttcaaaggccgaccttatgcggtagacaa |
247154 |
T |
|
| Q |
230 |
aactggacagactgttactgttggaccgta---tgactcaactgttcagttagtggctgaatctttgcttgctggcggggatattaaattcctagttgag |
326 |
Q |
| |
|
||||||| ||| ||| |||||||| | ||| || ||||| | |||||| |||||||||||| ||| ||| || |||||||||||| |||| ||| |
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| T |
247153 |
aactggatggacagttggatttggaccggaggatgattccactgtccggttagttgctgaatctttggttggtggtggagatattaaattcttagtggag |
247054 |
T |
|
| Q |
327 |
agcaagggtgatttgttgttagcagatgtttacga |
361 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |
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|
| T |
247053 |
agcaagggtgatttgttgttaatagatgtttacga |
247019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 81 - 223
Target Start/End: Complemental strand, 235567 - 235428
Alignment:
| Q |
81 |
cctatcatcgtcgcctcatttaactgtacaggagaagaacaactggtagtgttcaaatgcggcgatgagaattggaagtttattcctgaaatgtcagtct |
180 |
Q |
| |
|
|||||||| |||| ||| || |||||||| |||||||||| | |||||||| ||||| ||||||||||||||||| ||||||||| |||||| | || |
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| T |
235567 |
cctatcattgtcggctcgttgaactgtactggagaagaacca---gtagtgttgaaatgtggcgatgagaattggaaacttattcctggaatgtcggcct |
235471 |
T |
|
| Q |
181 |
actttggagatatccgtgctttcaaaggtcagtgttatgtggt |
223 |
Q |
| |
|
| || ||||| ||||||| ||||||||| ||| ||||||||| |
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| T |
235470 |
atttaggagacatccgtgttttcaaaggccagccttatgtggt |
235428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 311 - 377
Target Start/End: Complemental strand, 235424 - 235358
Alignment:
| Q |
311 |
taaattcctagttgagagcaagggtgatttgttgttagcagatgtttacgaccgtgagattgatgaa |
377 |
Q |
| |
|
||||||| |||| |||||| | |||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
235424 |
taaattcttagtggagagcgacggtgatttgttgttagcagatgtttatgaccatgagattgatgaa |
235358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 256 - 358
Target Start/End: Complemental strand, 33541915 - 33541813
Alignment:
| Q |
256 |
cgtatgactcaactgttcagttagtggctgaatctttgcttgctggcggggatattaaattcctagttgagagcaagggtgatttgttgttagcagatgt |
355 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||| ||| ||| || || | |||||| |||| ||||||||||||||||||||||||| ||||| |
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| T |
33541915 |
cgtatggctccactgttcagttagtggctgaatctttggttggtggtggagacgtcaaattcttagtggagagcaagggtgatttgttgttagtggatgt |
33541816 |
T |
|
| Q |
356 |
tta |
358 |
Q |
| |
|
||| |
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|
| T |
33541815 |
tta |
33541813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 261 - 358
Target Start/End: Complemental strand, 7013087 - 7012990
Alignment:
| Q |
261 |
gactcaactgttcagttagtggctgaatctttgcttgctggcggggatattaaattcctagttgagagcaagggtgatttgttgttagcagatgttta |
358 |
Q |
| |
|
||||||| ||| || |||||||||||| ||||| ||| ||||||||| || |||||| |||| |||||| ||| ||||||||||||||||||||||| |
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|
| T |
7013087 |
gactcaagtgtccaattagtggctgaacctttggttggtggcggggacatgaaattcttagtggagagcgaggaggatttgttgttagcagatgttta |
7012990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 276 - 358
Target Start/End: Complemental strand, 7026008 - 7025926
Alignment:
| Q |
276 |
ttagtggctgaatctttgcttgctggcggggatattaaattcctagttgagagcaagggtgatttgttgttagcagatgttta |
358 |
Q |
| |
|
|||||||||||| ||||| ||| |||||||| || |||||| |||| |||||| |||| |||||||||||||| |||||||| |
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| T |
7026008 |
ttagtggctgaacctttgattggcggcggggacatgaaattcttagtggagagcgagggggatttgttgttagcggatgttta |
7025926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 312 - 358
Target Start/End: Original strand, 212987 - 213033
Alignment:
| Q |
312 |
aaattcctagttgagagcaagggtgatttgttgttagcagatgttta |
358 |
Q |
| |
|
|||||| |||| |||||| |||||||||||||||||| ||||||||| |
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|
| T |
212987 |
aaattcttagtggagagcgagggtgatttgttgttagtagatgttta |
213033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 358
Target Start/End: Complemental strand, 7030068 - 7029983
Alignment:
| Q |
273 |
cagttagtggctgaatctttgcttgctggcggggatattaaattcctagttgagagcaagggtgatttgttgttagcagatgttta |
358 |
Q |
| |
|
|||||||||||||| ||||| ||| ||| || || | |||||| |||| |||||| |||| |||||||||||||| |||||||| |
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| T |
7030068 |
cagttagtggctgagcctttggttggtggtggaaatgtgaaattcttagtggagagcgagggggatttgttgttagcggatgttta |
7029983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 215 - 358
Target Start/End: Original strand, 9494635 - 9494781
Alignment:
| Q |
215 |
ttatgtggtagacaaaactggacagactgttactgttggaccgtatgactcaactgttcagttagtggctgaatctttgct---tgctggcggggatatt |
311 |
Q |
| |
|
|||||||||| |||||||||||| ||| | |||| |||||| | |||||| ||| | |||||||||||||||||||| | || ||| ||||| || |
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|
| T |
9494635 |
ttatgtggtacacaaaactggacggacagctactcttggactggatgacttcactttcgagttagtggctgaatctttggtttctggtgggggggacatc |
9494734 |
T |
|
| Q |
312 |
aaattcctagttgagagcaagggtgatttgttgttagcagatgttta |
358 |
Q |
| |
|
|||||| |||| ||||| | |||||||||||||||| ||||||||| |
|
|
| T |
9494735 |
aaattcttagtcgagagtgacggtgatttgttgttagtagatgttta |
9494781 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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