View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18672_high_9 (Length: 341)
Name: NF18672_high_9
Description: NF18672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18672_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 13 - 325
Target Start/End: Original strand, 42868234 - 42868546
Alignment:
| Q |
13 |
aatatcaaacacttgttgttttgatctaccaacacaagagggaagtccacaattttttgattgtgtctccacaaacttaagcaattgttgtttccatctt |
112 |
Q |
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| T |
42868234 |
aatatcaaacacttgttgttttgatctaccaacacaagagggaagtccacaattttttgattgtgtctccacaaacttaagcaattgttgtttccatctt |
42868333 |
T |
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| Q |
113 |
taaaaatcaatttttctagcattaaggacacttcggctagtagagatccctgagttgtcaagattaataacaaattggcatgaaggatcttggtaaagtt |
212 |
Q |
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| T |
42868334 |
taaaaatcaatttttctagcattaaggacacttcggctagtagagatccctgagttgtcaagattaataacaaattggcatgaaggatcttggtaaagtt |
42868433 |
T |
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| Q |
213 |
ggataatattgtggacacagttgttgcataattgagaatgtatgaaaaagatgttgaaatcagtcgcaaataattaattaggtaataaaagaagtacatt |
312 |
Q |
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| T |
42868434 |
ggataatattgtggacacagttgttgcataattgagaatgtatgaaaaagatgttgaaatcagtcgcaaataattaattaggtaataaaagaagtacatt |
42868533 |
T |
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| Q |
313 |
tatactatgaaat |
325 |
Q |
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| T |
42868534 |
tatactatgaaat |
42868546 |
T |
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