View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18672_low_12 (Length: 372)
Name: NF18672_low_12
Description: NF18672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18672_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 92 - 361
Target Start/End: Complemental strand, 41980492 - 41980223
Alignment:
| Q |
92 |
catgcaaagagtattgggatttaaacctcagaggtgtctcggagagagtataaagcattgctatcttttctcgctgatgaaaccaatattccacaacctc |
191 |
Q |
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| T |
41980492 |
catgcaaagagtattgggatttaaacctcagaggtgtctcggagagagtataaagcattgctatcttttctcactgatgaaaccaatattccacaacctc |
41980393 |
T |
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| Q |
192 |
gattgctctcccgcagcacctaaatacagtcaaaaattttagaattataatctgtctgcagattaaagagaaaatagaaaatgttattctagactaatta |
291 |
Q |
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| T |
41980392 |
gattgctctcccgcagcacctaaatacattcaaaaattttagaattataatctgtctgcggattaaagagaaaatagaaaatgttattctagactaatta |
41980293 |
T |
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| Q |
292 |
aatccaataccttgaatgcgtcttcatctgttttatcatctccaatgtagataggaagcacatcattcat |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41980292 |
aatccaataccttgaatgcgtcttcatctgttttatcatctccaatgtagataggaagcacatcattcat |
41980223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 41980614 - 41980577
Alignment:
| Q |
19 |
acacgtatataattataattcgtaattataatcttgct |
56 |
Q |
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| T |
41980614 |
acacgtatataattataattcgtaattataatcttgct |
41980577 |
T |
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