View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18672_low_15 (Length: 238)

Name: NF18672_low_15
Description: NF18672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18672_low_15
NF18672_low_15
[»] chr5 (3 HSPs)
chr5 (19-125)||(6007567-6007675)
chr5 (168-238)||(6007433-6007503)
chr5 (148-186)||(6007504-6007542)
[»] chr4 (5 HSPs)
chr4 (19-125)||(33463704-33463812)
chr4 (148-238)||(33463837-33463927)
chr4 (19-111)||(48569433-48569527)
chr4 (33-124)||(51412637-51412730)
chr4 (155-191)||(48569577-48569613)
[»] chr3 (3 HSPs)
chr3 (19-125)||(54901328-54901436)
chr3 (148-238)||(54901213-54901303)
chr3 (21-125)||(33862105-33862210)
[»] chr2 (5 HSPs)
chr2 (19-111)||(30544754-30544848)
chr2 (19-111)||(44154909-44155003)
chr2 (19-111)||(8145571-8145665)
chr2 (155-191)||(8145715-8145751)
chr2 (155-191)||(44154823-44154859)
[»] chr1 (2 HSPs)
chr1 (19-125)||(49420868-49420976)
chr1 (21-125)||(42645953-42646057)
[»] chr6 (1 HSPs)
chr6 (25-125)||(1770697-1770799)
[»] chr8 (2 HSPs)
chr8 (21-125)||(33688252-33688355)
chr8 (19-123)||(35839749-35839854)
[»] chr7 (4 HSPs)
chr7 (27-125)||(9007-9108)
chr7 (25-116)||(47800101-47800194)
chr7 (75-125)||(8667-8715)
chr7 (22-72)||(46251420-46251470)


Alignment Details
Target: chr5 (Bit Score: 94; Significance: 5e-46; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 19 - 125
Target Start/End: Complemental strand, 6007675 - 6007567
Alignment:
Q  19 ttgtttcccatgatgggaaagttgattttggccatttgattaaataaagag--cactattatcatgttctcacaacactgaattattttcacactatctt 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  6007675 ttgtttcccatgatgggaaagttgattttggccatttgattaaataaagagcacactattatcatgttctcacaacactgaattattttcacactatctt 6007576  T
Q  117 tcccaacaa 125  Q
    ||| |||||    
T  6007575 tccaaacaa 6007567  T

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Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 168 - 238
Target Start/End: Complemental strand, 6007503 - 6007433
Alignment:
Q  168 tcacaattgattcatcttccatttaaacgaaaataaaacaattgcaccatcacaatctattcatctttaat 238  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||    
T  6007503 tcacaattgattcatcttccatttgaacgaagataaaacaattgcaccatcacaatctatccatctttaat 6007433  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 148 - 186
Target Start/End: Complemental strand, 6007542 - 6007504
Alignment:
Q  148 accaactacaaccagcaacttcacaattgattcatcttc 186  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  6007542 accaaccacaaccagcaacttcacaattgattcatcttc 6007504  T

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Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 125
Target Start/End: Original strand, 33463704 - 33463812
Alignment:
Q  19 ttgtttcccatgatgggaaagttgattttggccatttgattaaataaagagcac--tattatcatgttctcacaacactgaattattttcacactatctt 116  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  33463704 ttgttttccatgatgggaaaattgattttggccatttgattaaataaagagcacactattatcatgttctcacaacactgaattattttcacactatctt 33463803  T
Q  117 tcccaacaa 125  Q
    ||| |||||    
T  33463804 tccaaacaa 33463812  T

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Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 148 - 238
Target Start/End: Original strand, 33463837 - 33463927
Alignment:
Q  148 accaactacaaccagcaacttcacaattgattcatcttccatttaaacgaaaataaaacaattgcaccatcacaatctattcatctttaat 238  Q
    |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  33463837 accaacaacaaccagcaacttcacaattgattcatcttccatttgaacgaaaataaaacaattgcaccatcacaatctattcatctttaat 33463927  T

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Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 48569433 - 48569527
Alignment:
Q  19 ttgtttcccatgatgggaaagttgattttggccatttgattaaataaagag--cactattatcatgttctcacaacactgaattattttcacact 111  Q
    |||||||||||||||||||||||||||||  || |||||||||||||||||  |||| ||||||||||||||||||||| ||||||||| |||||    
T  48569433 ttgtttcccatgatgggaaagttgattttaaccgtttgattaaataaagagtacactgttatcatgttctcacaacactaaattattttgacact 48569527  T

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Target: chr4; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 33 - 124
Target Start/End: Original strand, 51412637 - 51412730
Alignment:
Q  33 gggaaagttgattttggccatttgattaaataaagagcac--tattatcatgttctcacaacactgaattattttcacactatctttcccaaca 124  Q
    ||||||||||||||| ||||||||||||||||| ||||||  | ||||||||||||| |||||||||||| ||||||||||||||| |||||||    
T  51412637 gggaaagttgattttagccatttgattaaataaggagcacactcttatcatgttctctcaacactgaatttttttcacactatcttccccaaca 51412730  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 191
Target Start/End: Original strand, 48569577 - 48569613
Alignment:
Q  155 acaaccagcaacttcacaattgattcatcttccattt 191  Q
    ||||||||||||||||||||  |||||||||||||||    
T  48569577 acaaccagcaacttcacaatgtattcatcttccattt 48569613  T

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Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 125
Target Start/End: Complemental strand, 54901436 - 54901328
Alignment:
Q  19 ttgtttcccatgatgggaaagttgattttggccatttgattaaataaagagcac--tattatcatgttctcacaacactgaattattttcacactatctt 116  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  54901436 ttgttttccatgatgggaaacttgattttggccatttgattaaataaagagcacactattatcatgttctcacaacactgaattattttcacactatctt 54901337  T
Q  117 tcccaacaa 125  Q
    ||| |||||    
T  54901336 tccaaacaa 54901328  T

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Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 148 - 238
Target Start/End: Complemental strand, 54901303 - 54901213
Alignment:
Q  148 accaactacaaccagcaacttcacaattgattcatcttccatttaaacgaaaataaaacaattgcaccatcacaatctattcatctttaat 238  Q
    |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  54901303 accaaccacaaccagcaacttcacaattgattcatcttccatttgaacgaaaataaaacaattgcaccatcacaatctattcatctttaat 54901213  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 125
Target Start/End: Complemental strand, 33862210 - 33862105
Alignment:
Q  21 gtttcccatgatgggaaagttgattttggccatttgattaaataaaga--gcactattatcatgttctcacaacactgaattattttcacactatctttc 118  Q
    |||||| ||||||| ||||||||| || ||| ||||||||||||||||   |||| ||||||||||||| | ||||| |||| |||| ||| |||||| |    
T  33862210 gtttcctatgatggaaaagttgatcttagccctttgattaaataaagaacacactcttatcatgttctctctacacttaatt-ttttaacattatcttcc 33862112  T
Q  119 ccaacaa 125  Q
    |||||||    
T  33862111 ccaacaa 33862105  T

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Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 30544754 - 30544848
Alignment:
Q  19 ttgtttcccatgatgggaaagttgattttggccatttgattaaataaagag--cactattatcatgttctcacaacactgaattattttcacact 111  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| |||||    
T  30544754 ttgtttcccatgatgggaaagttgattttagccatttgattaaataaagagtacactattatcatgttctcacaacactgaattattttgacact 30544848  T

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Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 44155003 - 44154909
Alignment:
Q  19 ttgtttcccatgatgggaaagttgattttggccatttgattaaataaagag--cactattatcatgttctcacaacactgaattattttcacact 111  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||| |||||    
T  44155003 ttgtttcccatgatggaaaagttgattttagccatttgattaaataaagagtacactattatcatgttctcacaacaccgaattattttgacact 44154909  T

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Target: chr2; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 8145571 - 8145665
Alignment:
Q  19 ttgtttcccatgatgggaaagttgattttggccatttgattaaataaagag--cactattatcatgttctcacaacactgaattattttcacact 111  Q
    |||||||| ||||| |||||||||||||| |||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||| |||||    
T  8145571 ttgtttcctatgataggaaagttgattttagccatttgattaaataaagagtacactattatcatgttctcataacactgaattattttgacact 8145665  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 191
Target Start/End: Original strand, 8145715 - 8145751
Alignment:
Q  155 acaaccagcaacttcacaattgattcatcttccattt 191  Q
    ||||||||||||||||||||  |||||||||||||||    
T  8145715 acaaccagcaacttcacaatgtattcatcttccattt 8145751  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 191
Target Start/End: Complemental strand, 44154859 - 44154823
Alignment:
Q  155 acaaccagcaacttcacaattgattcatcttccattt 191  Q
    ||||||||||||||||||||  |||||||||||||||    
T  44154859 acaaccagcaacttcacaatgtattcatcttccattt 44154823  T

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Target: chr1 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 19 - 125
Target Start/End: Complemental strand, 49420976 - 49420868
Alignment:
Q  19 ttgtttcccatgatgggaaagttgattttggccatttgattaaataaagagca--ctattatcatgttctcacaacactgaattattttcacactatctt 116  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||| |||||  || ||||||||||||| | |||||||||| |||||||||||||||    
T  49420976 ttgtttcccatgatggaaaagttgattttagccatttgattaaataaggagcaccctcttatcatgttctctccacactgaatttttttcacactatctt 49420877  T
Q  117 tcccaacaa 125  Q
      |||||||    
T  49420876 ctccaacaa 49420868  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 21 - 125
Target Start/End: Complemental strand, 42646057 - 42645953
Alignment:
Q  21 gtttcccatgatgggaaagttgattttggccatttgattaaataaagag--cactattatcatgttctcacaacactgaattattttcacactatctttc 118  Q
    |||| |||| |||||||||||||| || |||||||||||||||||||||  |||| ||||||||||||| |||||||||||  ||||||||||||||| |    
T  42646057 gttttccataatgggaaagttgatcttagccatttgattaaataaagagtacactcttatcatgttctctcaacactgaat--ttttcacactatcttcc 42645960  T
Q  119 ccaacaa 125  Q
    |||||||    
T  42645959 ccaacaa 42645953  T

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Target: chr6 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 25 - 125
Target Start/End: Complemental strand, 1770799 - 1770697
Alignment:
Q  25 cccatgatgggaaagttgattttggccatttgattaaataaagag--cactattatcatgttctcacaacactgaattattttcacactatctttcccaa 122  Q
    |||||||||||||||||||| || |||||||||||||||||||||  |||| ||||||||||||| | ||| |||||| |||||||| |||||| |||||    
T  1770799 cccatgatgggaaagttgatcttagccatttgattaaataaagagcacactcttatcatgttctccctacattgaatttttttcacattatcttccccaa 1770700  T
Q  123 caa 125  Q
    |||    
T  1770699 caa 1770697  T

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Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 125
Target Start/End: Original strand, 33688252 - 33688355
Alignment:
Q  21 gtttcccatgatgggaaagttgattttggccatttgattaaataaagag--cactattatcatgttctcacaacactgaattattttcacactatctttc 118  Q
    ||||||||| |||||||||||||| || |||||||||||||||||||||  |||| |||| |||||||| |||||||||||  ||||||||||||||| |    
T  33688252 gtttcccat-atgggaaagttgatcttagccatttgattaaataaagagtacactcttattatgttctctcaacactgaat--ttttcacactatcttcc 33688348  T
Q  119 ccaacaa 125  Q
    |||||||    
T  33688349 ccaacaa 33688355  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 123
Target Start/End: Original strand, 35839749 - 35839854
Alignment:
Q  19 ttgtttcccatgatgggaaagttgattttggccatttgattaaataaagagcac--tattatcatgttctcacaacactgaattattttcacactatctt 116  Q
    ||||||||||||||| |||||||  ||||| | ||  |||||| ||| ||||||  | ||||||||||||| |||||||||||| |||||||||||||||    
T  35839749 ttgtttcccatgatgagaaagttttttttgactatcagattaagtaaggagcacactcttatcatgttctctcaacactgaatt-ttttcacactatctt 35839847  T
Q  117 tcccaac 123  Q
    |||||||    
T  35839848 tcccaac 35839854  T

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Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 27 - 125
Target Start/End: Complemental strand, 9108 - 9007
Alignment:
Q  27 catgatgggaaagttgattttggccatttgattaaataaagag--cactattatcatgttctcacaacactgaa-ttattttcacactatctttcccaac 123  Q
    |||||||||||||||||| || |||||||||||||||||||||  |||| ||||||||||||| | ||| |||| || |||||||| |||||| ||||||    
T  9108 catgatgggaaagttgatcttagccatttgattaaataaagagcacactcttatcatgttctccctacattgaattttttttcacattatcttccccaac 9009  T
Q  124 aa 125  Q
    ||    
T  9008 aa 9007  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 116
Target Start/End: Complemental strand, 47800194 - 47800101
Alignment:
Q  25 cccatgatgggaaagttgattttggccatttgattaaataaagag--cactattatcatgttctcacaacactgaattattttcacactatctt 116  Q
    ||||||||||||||||||||  | | |||||||||||||||||||  |||| ||||||||||||| | ||| |||||| |||||||| ||||||    
T  47800194 cccatgatgggaaagttgatcatagtcatttgattaaataaagagcacactcttatcatgttctccctacattgaatttttttcacattatctt 47800101  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 125
Target Start/End: Complemental strand, 8715 - 8667
Alignment:
Q  75 ttatcatgttctcacaacactgaattattttcacactatctttcccaacaa 125  Q
    ||||||||||||| |||||||||||  ||||||||||||||| ||||||||    
T  8715 ttatcatgttctctcaacactgaat--ttttcacactatcttccccaacaa 8667  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 46251420 - 46251470
Alignment:
Q  22 tttcccatgatgggaaagttgattttggccatttgattaaataaagagcac 72  Q
    |||||||  ||||||||||||||||| |||||| |||||| ||||||||||    
T  46251420 tttcccaccatgggaaagttgattttagccattagattaattaaagagcac 46251470  T

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