View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18672_low_3 (Length: 522)
Name: NF18672_low_3
Description: NF18672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18672_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 18 - 497
Target Start/End: Original strand, 2432458 - 2432947
Alignment:
| Q |
18 |
catggctcttccaaccctgatggatttcatttgacaatcaacaacattaaagctgttattcaggttaaagatattattttgggtacacaacatgannnnn |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2432458 |
catggctcttccaaccctgatggatttcatttgacaatcaacaacattaaagctgttattcaggttaaagatatttttttgggtacacaacatgatttat |
2432557 |
T |
|
| Q |
118 |
nnnn-------------aagtaaagcacacataaatttattacctaaactaattttcactgtaaagtaaattcttttgactaaattattctaacatacat |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |
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| T |
2432558 |
tttattttatttttgttaagtaaagcacacataaatttattacctaaactaattttcactgtaaagtaaattcttttgactaaattagtctaacatactt |
2432657 |
T |
|
| Q |
205 |
gtagattagtcttacaccatgcacttgtttgtttttcatctttcgatcaattagtcacaccaatctcatttgatctaatgataatccattagcgaaaaca |
304 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2432658 |
-tagattagtcttacaccatgcacatgtttgtttttcatctttcgatcaattagtcacaccaatctcatttgatctaatgataatccattagcgaaaaca |
2432756 |
T |
|
| Q |
305 |
aacttgtgcatgatacaagacttgtctaacttatgcatcatatacttgaccaaaatatccttctaaccactagaaaatattgaagtaatataaaaattaa |
404 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2432757 |
aacttgtgcatgatacaagacttgtctaacttatgcatcatatacttgaccaaaatatccttctaactactagaaaatattgaagtaatataaaaattaa |
2432856 |
T |
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| Q |
405 |
agtgattattaaattttttgtctctaagatttaagaatgaaattagataaaaactttttgtctttttccgaccctaaattttggtcgctctca |
497 |
Q |
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| T |
2432857 |
agtgattattaaattttttgtctctaagatttaagaatgaaattagagacaaac--tttgtctttttccgaccctaaattttggtcgctctca |
2432947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 41646442 - 41646507
Alignment:
| Q |
19 |
atggctcttccaaccctgatggatttcatttgacaatcaacaacattaaagctgttattcaggtta |
84 |
Q |
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|||||||||| || || ||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
41646442 |
atggctcttctaatccggatggatttcatttgacaatcaacaacattaaagccgttattcaggtta |
41646507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 41653655 - 41653706
Alignment:
| Q |
33 |
cctgatggatttcatttgacaatcaacaacattaaagctgttattcaggtta |
84 |
Q |
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| T |
41653655 |
cctgatggatttcatttgacaatcaacaacattaaagccgttattcaggtta |
41653706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 30 - 85
Target Start/End: Complemental strand, 12439016 - 12438961
Alignment:
| Q |
30 |
aaccctgatggatttcatttgacaatcaacaacattaaagctgttattcaggttaa |
85 |
Q |
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|||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
12439016 |
aaccgtgatggatttcatttgacaaccaacaacattaaagctgttattcaggttaa |
12438961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 85
Target Start/End: Complemental strand, 5022997 - 5022950
Alignment:
| Q |
38 |
tggatttcatttgacaatcaacaacattaaagctgttattcaggttaa |
85 |
Q |
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| T |
5022997 |
tggatttcatttgacaatcaacaatattaaagccattatccaggttaa |
5022950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 355
Target Start/End: Original strand, 26979693 - 26979750
Alignment:
| Q |
298 |
gaaaacaaacttgtgcatgatacaagacttgtctaacttatgcatcatatacttgacc |
355 |
Q |
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||||||||||||||||||||||||||| || ||| |||| |||| |||| | |||||| |
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| T |
26979693 |
gaaaacaaacttgtgcatgatacaagatttatctcacttgtgcaccataaaattgacc |
26979750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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