View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18672_low_4 (Length: 514)
Name: NF18672_low_4
Description: NF18672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18672_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 438; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 18 - 503
Target Start/End: Original strand, 32198920 - 32199406
Alignment:
| Q |
18 |
ttttgaagtgcacaaatctctttaattttgttgaaaagtgttttatacattcactctattaggctattatatcactaaaagcttttcatagcttaaattt |
117 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32198920 |
ttttgaagtgcacaagtctctttaattttgttgaaaagtgttttatacattcactttattaggctattatatcactaaaagcttttcatagcttaaattt |
32199019 |
T |
|
| Q |
118 |
gtaatgtatcagagaaaacatcatagttgacaaaattatggtaacattgtgtatagacatagcatggttttattctccccacaactatttatttactcag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
32199020 |
gtaatgtatcagagaaaacatcatagttgacaaaattatggtaacattgtgtatagacatagcatggttttattgtccccacaactatttatttactcag |
32199119 |
T |
|
| Q |
218 |
ttatatatatctctaattttgtttaattgcttttaagatatatacaatttccattttgtattagaagcttgtctcttttaatttttgcatgataaatata |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32199120 |
ttatatatatctctaattttgtttaattgcttttaagatatatacaatttccattttgtattagaagcttgtctcttttaatttttgcatgataaatata |
32199219 |
T |
|
| Q |
318 |
tataactaatcttacattgttaggatatatttgtcacaagtttagtttacatattgtaatttcttggtttctatatcaaaaaacatgttct-gttannnn |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
32199220 |
tataactaatcttacattgttaggatatatttgtcacaagtttagtttacatattgtaatttcttggtttctatatcaaaaaacatgttttagttatttt |
32199319 |
T |
|
| Q |
417 |
nnncatcaaggatgttgagaaggttattctccaatcatcaagcatgtactatttgttttaaaaactattaaagaaactttcgggatc |
503 |
Q |
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| T |
32199320 |
tttcatcaaggatgttgagaaggttattctccaatcatcaagcatgtactatttgttttaaaaactattaaagaaactttcaggatc |
32199406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 283 - 503
Target Start/End: Original strand, 32196718 - 32196946
Alignment:
| Q |
283 |
agcttgtctcttttaatttttgcatgataaatatatataactaatcttacattgttaggatatatttgtcacaagtttagtttacatattgtaat----- |
377 |
Q |
| |
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||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
32196718 |
agcttgtctctttaaattattgcatgataaatatatataactaatcttacattgttaagatatatttgtcacaagtttagtttacatattgtaattttta |
32196817 |
T |
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| Q |
378 |
---ttcttggtttctatatcaaaaaacatgttctgttannnnnnncatcaaggatgttgagaaggttattctccaatcatcaagcatgtactatttgttt |
474 |
Q |
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| T |
32196818 |
cagttcttggtttctatatcaaaaaataggttctgttatttttttcatcaaggatgttgagaaggttattctccaatcatcaaacatgtactaattgttt |
32196917 |
T |
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| Q |
475 |
taaaaactattaaagaaactttcgggatc |
503 |
Q |
| |
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| T |
32196918 |
taaaaactattaaagaacctttcaggatc |
32196946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 18 - 224
Target Start/End: Original strand, 32196502 - 32196718
Alignment:
| Q |
18 |
ttttgaagtgcacaaatctctttaattttgttgaaaagtgttttatacattcactctattaggctattatatcactaaaagcttttcatagcttaaattt |
117 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||| | || ||| | ||||||||| ||| ||||||||||||||||||||||||||||||||||| |
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| T |
32196502 |
ttttgaagtgcacaagtctctttaattttgttgaaaagcgcttcatagactcactctataaggtgattatatcactaaaagcttttcatagcttaaattt |
32196601 |
T |
|
| Q |
118 |
gtaa--------tgtatcagagaaaacatcatagttgacaaaattatggtaacattgtgta--tagacatagcatggttttattctccccacaactattt |
207 |
Q |
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|||| ||||| ||||||||||||||||||||||||||||||||| |||||||| | | |||||||||||||||||||||||||||||||| |
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| T |
32196602 |
gtaaatttgtactgtattggagaaaacatcatagttgacaaaattatggtaaaattgtgtaaggatatatagcatggttttattctccccacaactattt |
32196701 |
T |
|
| Q |
208 |
atttactcagttatata |
224 |
Q |
| |
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||||||||||||||||| |
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| T |
32196702 |
atttactcagttatata |
32196718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 229 - 325
Target Start/End: Complemental strand, 40401847 - 40401751
Alignment:
| Q |
229 |
tctaattttgtttaattgcttttaagatatatacaatttccattttgtattagaagcttgtctcttttaatttttgcatgataaatatatataacta |
325 |
Q |
| |
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|||| |||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||| |
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| T |
40401847 |
tctacttttgtttaattgcttttaagacagatacaatttccattttgtattagaagtctgtctctcttaatttttgcatgataaacatatataacta |
40401751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 66 - 167
Target Start/End: Original strand, 44925578 - 44925679
Alignment:
| Q |
66 |
attcactctattaggctattatatcactaaaagcttttcatagcttaaatttgtaatgtatcagagaaaacatcatagttgacaaaattatggtaacatt |
165 |
Q |
| |
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|||||||||| ||| ||||||||||| || |||||||| ||||||||||| | || |||| ||||||||| ||||||||| ||||| ||| ||||| |
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| T |
44925578 |
attcactctacaaggtgattatatcactgaaggcttttcaaagcttaaattttttttgaatcaaagaaaacattatagttgacgaaattgcggtgacatt |
44925677 |
T |
|
| Q |
166 |
gt |
167 |
Q |
| |
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|| |
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|
| T |
44925678 |
gt |
44925679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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