View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18672_low_6 (Length: 469)
Name: NF18672_low_6
Description: NF18672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18672_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 118 - 450
Target Start/End: Complemental strand, 41042059 - 41041727
Alignment:
| Q |
118 |
ttatataccgtcatttattatattttgattttgttctgttgcattgcagttataccttgtttagaatgtttgatgatatagtacttctagcaaaaggtgg |
217 |
Q |
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| T |
41042059 |
ttatatactgtcatttattatattttgattttgttctgttgcattgcagttataccttgtttagaatgtttgatgatatagtatttctagcaaaaggtgg |
41041960 |
T |
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| Q |
218 |
tcttacagcatatcatggtccagtgaaaaaagtagaagaatacttttctggcattggaatccctgtaccggatcgcgttaatcctccggaccattttatt |
317 |
Q |
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| T |
41041959 |
tcttacagcatatcatggtccagtgaaaaaagtagaagaatacttttctggcattggaatccctgtaccggatcgcgttaatcctccggaccattttatt |
41041860 |
T |
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| Q |
318 |
gatattctggaaggtttagagaaaccaacttcaggtctaactattgaaacacttcctgttagatggatgcttcataatggatacccagtaccaccagata |
417 |
Q |
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| T |
41041859 |
gatattctggaaggtttagagaaaccaacttcaggtctaactattgaaacacttcctgttagatggatgcttcataatggatacccagtaccaccagata |
41041760 |
T |
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| Q |
418 |
tgcttcatttggctgataaaatcgccactcctt |
450 |
Q |
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| T |
41041759 |
tgcttcatttggctgataaaatcgccactcctt |
41041727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 28809899 - 28809800
Alignment:
| Q |
20 |
cacttgatggttggcttgtacttttgcgggcaagtcctactgacatcagaaatcatggtttgcattggactacttctaagcttccatatattaatccctt |
119 |
Q |
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| T |
28809899 |
cacttgatggttggcttgtactt--gcaggcaagttctactgacatcagaaatcatggtttgcattggactacttctaagcttccatatattaatccctt |
28809802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 168 - 426
Target Start/End: Original strand, 28088694 - 28088952
Alignment:
| Q |
168 |
tataccttgtttagaatgtttgatgatatagtacttctagcaaaaggtggtcttacagcatatcatggtccagtgaaaaaagtagaagaatacttttctg |
267 |
Q |
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| T |
28088694 |
tatactttgttcagaatgtttgatgatataatatttctagcaaaaggtggccttactgcatatcacggacctgtaaaaaaagtagaagaatactttgccg |
28088793 |
T |
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| Q |
268 |
gcattggaatccctgtaccggatcgcgttaatcctccggaccattttattgatattctggaaggtttagagaaaccaacttcaggtctaactattgaaac |
367 |
Q |
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| T |
28088794 |
gcattggtatccctgttcctgatcgcgtgaatcctccagaccattttattgacattctggaaggtttagtgaaaccaaatgaaggtgtgacttatcaaca |
28088893 |
T |
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| Q |
368 |
acttcctgttagatggatgcttcataatggatacccagtaccaccagatatgcttcatt |
426 |
Q |
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| T |
28088894 |
actacctgtcagatggatgattcataatggttacccagtaccaccagatatgcttcatt |
28088952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 183 - 277
Target Start/End: Original strand, 21493470 - 21493564
Alignment:
| Q |
183 |
atgtttgatgatatagtacttctagcaaaaggtggtcttacagcatatcatggtccagtgaaaaaagtagaagaatacttttctggcattggaat |
277 |
Q |
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| T |
21493470 |
atgtttgatgattttatactgctagctaaaggaggtcttacagtgtatcatggacctgtgaacaaagtagaagaatacttctctggcatcggaat |
21493564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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