View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18672_low_9 (Length: 396)
Name: NF18672_low_9
Description: NF18672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18672_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 27145622 - 27145994
Alignment:
| Q |
1 |
tcatcaaatcaatcttatccactaaatacatatccaataataatatataaaatatttcagctcaaatttttggttgatcaagatgaaaatatgatggtgt |
100 |
Q |
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| T |
27145622 |
tcatcaaatcaatcttatccactaaatacatatccaataataatatataaaatatttcagctcaaatttttggttgatcaagatgaaaatatgatggtgt |
27145721 |
T |
|
| Q |
101 |
gcattgttttatcccaaagtttcctacctgcactactttgtgatgatttctctgcataagaggtcttttaccaaactcaaacaacactaaatttaca-tt |
199 |
Q |
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| T |
27145722 |
gcattgttttatcccaaagtttcctacctgcactactttgtgatgatttctcagcataagaggtcttttaccaaactcaaacaacactaaatttacattt |
27145821 |
T |
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| Q |
200 |
tataaggnnnnnnnnnnnnnnnnnnnnnngaactagtaaagacgttgatcaaccttacaagaaatacatttgttaccaacaattcaaaataatgactctt |
299 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27145822 |
tataagg-------aaataaaaataaaaagaactagtaaagacgttgatcaaccttacaagaaatacatttgttaccaacaattcaaaataatgactctt |
27145914 |
T |
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| Q |
300 |
accaaaccaatggtcaacccaatgcatttaagaacgtctcttcgcctccaatggaagaactgttcttcttcatcgctaac |
379 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27145915 |
accaaaccaatggtcaacccaatgcatttaagaacgtctcttcgcctccaatggaagaactgttcttcttcatcgctaac |
27145994 |
T |
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