View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18673_high_1 (Length: 571)

Name: NF18673_high_1
Description: NF18673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18673_high_1
NF18673_high_1
[»] chr4 (7 HSPs)
chr4 (281-468)||(11101845-11102029)
chr4 (42-156)||(440242-440356)
chr4 (42-159)||(4655948-4656065)
chr4 (42-158)||(3504514-3504630)
chr4 (41-111)||(12200475-12200545)
chr4 (160-214)||(11103473-11103527)
chr4 (220-250)||(11102034-11102064)
[»] chr3 (2 HSPs)
chr3 (42-156)||(15796568-15796682)
chr3 (42-156)||(4324452-4324566)
[»] chr1 (3 HSPs)
chr1 (42-157)||(32645503-32645618)
chr1 (46-159)||(24607615-24607730)
chr1 (65-117)||(51811221-51811273)
[»] chr8 (3 HSPs)
chr8 (42-156)||(31104101-31104215)
chr8 (42-159)||(43603725-43603842)
chr8 (71-108)||(28133715-28133752)
[»] chr5 (2 HSPs)
chr5 (42-159)||(23357025-23357142)
chr5 (42-159)||(32891543-32891659)
[»] chr7 (2 HSPs)
chr7 (42-158)||(23680408-23680524)
chr7 (506-553)||(13410800-13410847)
[»] chr6 (1 HSPs)
chr6 (42-159)||(2025770-2025888)
[»] chr2 (2 HSPs)
chr2 (474-532)||(45531790-45531848)
chr2 (63-128)||(39238019-39238084)


Alignment Details
Target: chr4 (Bit Score: 113; Significance: 6e-57; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 281 - 468
Target Start/End: Complemental strand, 11102029 - 11101845
Alignment:
Q  281 gaaaatggagaataaagttaaataactttcaccagtaatgaaactcgttggtgacggtgtgcacatgcacaccctttactttgaaaaataatcttataaa 380  Q
    |||||||||||||||||||||||   |||||| ||||||||||||||||||||| |||||||||||||||||  |||||| ||||||||||||||||||     
T  11102029 gaaaatggagaataaagttaaatctgtttcactagtaatgaaactcgttggtgatggtgtgcacatgcacac--tttactctgaaaaataatcttataa- 11101933  T
Q  381 tcttattttatgttttatctcgaccgtctaagcaatatagttttccatccttttatcaatattatcatttatggacacacaagctatg 468  Q
    ||||||||||||||||||||| |  |||| |||||||||||||||||||  ||||||||||||||||| ||| |||||||||||||||    
T  11101932 tcttattttatgttttatctccattgtctcagcaatatagttttccatctgtttatcaatattatcatctatagacacacaagctatg 11101845  T

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Target: chr4; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 42 - 156
Target Start/End: Original strand, 440242 - 440356
Alignment:
Q  42 tttttcacggtgcacgctacccaatgtcacttttaccgtgattttatgaagctggaaattccagcttttgcctagaagtgcttttttgagctttccaccc 141  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||     
T  440242 tttttcacggtgcacgctacccaatatcacttttactgtgattttatgaagctggaaattccagcttttgcctaaaagtgcttttttgagctttccaccg 440341  T
Q  142 gtattccaaacacat 156  Q
    |||||||||||||||    
T  440342 gtattccaaacacat 440356  T

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Target: chr4; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 42 - 159
Target Start/End: Complemental strand, 4656065 - 4655948
Alignment:
Q  42 tttttcacggtgcacgctacccaatgtcacttttaccgtgattttatgaagctggaaattccagcttttgcctagaagtgcttttttgagctttccaccc 141  Q
    ||||||||||||||||||||  |||||||||||||| ||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||     
T  4656065 tttttcacggtgcacgctacataatgtcacttttacagtgattttatgaagctgaaaattccagattttgcctaaaagtgcttttttgagctttccaccg 4655966  T
Q  142 gtattccaaacacatact 159  Q
    ||||||||||||||||||    
T  4655965 gtattccaaacacatact 4655948  T

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Target: chr4; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 42 - 158
Target Start/End: Original strand, 3504514 - 3504630
Alignment:
Q  42 tttttcacggtgcacgctacccaatgtcacttttaccgtgattttatgaagctggaaattccagcttttgcctagaagtgcttttttgagctttccaccc 141  Q
    ||||| ||||||||||||||||||||||||||||||  |||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||     
T  3504514 ttttttacggtgcacgctacccaatgtcacttttactatgattttatgaagctgaaaatctcagcttttgcctagaagtgcttttttgagctttccaccg 3504613  T
Q  142 gtattccaaacacatac 158  Q
    |||||||||||||||||    
T  3504614 gtattccaaacacatac 3504630  T

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Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 41 - 111
Target Start/End: Complemental strand, 12200545 - 12200475
Alignment:
Q  41 atttttcacggtgcacgctacccaatgtcacttttaccgtgattttatgaagctggaaattccagcttttg 111  Q
    |||||| |||||| ||| |  ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  12200545 attttttacggtgtacgttttccaatgtcacttttaccgtgactttatgaagctggaaattccagcttttg 12200475  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 160 - 214
Target Start/End: Complemental strand, 11103527 - 11103473
Alignment:
Q  160 gagtggtttaactatttatcactgtgatagggcaatggttaagtttttagtctta 214  Q
    |||||||||| | ||||||||||||||||||| |||||||  |||||||||||||    
T  11103527 gagtggtttagccatttatcactgtgatagggaaatggttcggtttttagtctta 11103473  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 220 - 250
Target Start/End: Complemental strand, 11102064 - 11102034
Alignment:
Q  220 ttgtatgaaagtatttccttgatagtaatat 250  Q
    |||||||||||||||||||||||||||||||    
T  11102064 ttgtatgaaagtatttccttgatagtaatat 11102034  T

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Target: chr3 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 42 - 156
Target Start/End: Original strand, 15796568 - 15796682
Alignment:
Q  42 tttttcacggtgcacgctacccaatgtcacttttaccgtgattttatgaagctggaaattccagcttttgcctagaagtgcttttttgagctttccaccc 141  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  15796568 tttttcacggtgcacgctacccaatatcacttttaccgtgattttatgaagctggaaattccagcttttgcctagaagtgcttttttgagctttccaccg 15796667  T
Q  142 gtattccaaacacat 156  Q
    |||||||||||||||    
T  15796668 gtattccaaacacat 15796682  T

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Target: chr3; HSP #2
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 42 - 156
Target Start/End: Complemental strand, 4324566 - 4324452
Alignment:
Q  42 tttttcacggtgcacgctacccaatgtcacttttaccgtgattttatgaagctggaaattccagcttttgcctagaagtgcttttttgagctttccaccc 141  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  4324566 tttttcacggtgcacgctacccaatatcacttttactgtgattttatgaagctggaaattccagcttttgcctagaagtgcttttttgagctttccaccg 4324467  T
Q  142 gtattccaaacacat 156  Q
    |||||||||||||||    
T  4324466 gtattccaaacacat 4324452  T

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Target: chr1 (Bit Score: 100; Significance: 3e-49; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 42 - 157
Target Start/End: Original strand, 32645503 - 32645618
Alignment:
Q  42 tttttcacggtgcacgctacccaatgtcacttttaccgtgattttatgaagctggaaattccagcttttgcctagaagtgcttttttgagctttccaccc 141  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||     
T  32645503 tttttcacggtgcacgctatccaatgtcacttttaccgtgattttatgaagctggaaattccaacttttgcctagacgtgcttttttgagctttccaccg 32645602  T
Q  142 gtattccaaacacata 157  Q
    ||||||||||||||||    
T  32645603 gtattccaaacacata 32645618  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 46 - 159
Target Start/End: Original strand, 24607615 - 24607730
Alignment:
Q  46 tcacggtgcacgctacccaatgtcacttttaccgtgattttatgaagctggaaattccagcttttgcctagaagtgc--ttttttgagctttccacccgt 143  Q
    ||||||| |||||| |||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||| ||||  ||||||  ||||| |||| ||    
T  24607615 tcacggttcacgcttcccaatgttacttttaccgtgactttatgaagctgaaaattccagcttttgcctagacgtgcgttttttttggctttgcaccggt 24607714  T
Q  144 attccaaacacatact 159  Q
    ||||||||||||||||    
T  24607715 attccaaacacatact 24607730  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 65 - 117
Target Start/End: Original strand, 51811221 - 51811273
Alignment:
Q  65 atgtcacttttaccgtgattttatgaagctggaaattccagcttttgcctaga 117  Q
    |||||||||||||||||| ||||||||||| |||||||| |||||| ||||||    
T  51811221 atgtcacttttaccgtgactttatgaagctagaaattccggctttttcctaga 51811273  T

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Target: chr8 (Bit Score: 99; Significance: 1e-48; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 42 - 156
Target Start/End: Complemental strand, 31104215 - 31104101
Alignment:
Q  42 tttttcacggtgcacgctacccaatgtcacttttaccgtgattttatgaagctggaaattccagcttttgcctagaagtgcttttttgagctttccaccc 141  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||     
T  31104215 tttttcacggtgcacgctacccaatatcacttttactgtgattttatgaagctggaaattccagcttttgcttagaagtgcttttttgagctttccaccg 31104116  T
Q  142 gtattccaaacacat 156  Q
    |||||||||||||||    
T  31104115 gtattccaaacacat 31104101  T

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Target: chr8; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 42 - 159
Target Start/End: Original strand, 43603725 - 43603842
Alignment:
Q  42 tttttcacggtgcacgctacccaatgtcacttttaccgtgattttatgaagctggaaattccagcttttgcctagaagtgcttttttgagctttccaccc 141  Q
    ||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||     
T  43603725 tttttcacgatgcacgctatccaatgtcacttttagcgtgattttatgaagctggaaattccagcttttgcctaaaagtgcttttttgagctttccaccg 43603824  T
Q  142 gtattccaaacacatact 159  Q
    ||||| ||||||||||||    
T  43603825 gtatttcaaacacatact 43603842  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 108
Target Start/End: Original strand, 28133715 - 28133752
Alignment:
Q  71 cttttaccgtgattttatgaagctggaaattccagctt 108  Q
    ||||||||||||||||||||||||||||| || |||||    
T  28133715 cttttaccgtgattttatgaagctggaaactctagctt 28133752  T

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Target: chr5 (Bit Score: 94; Significance: 1e-45; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 42 - 159
Target Start/End: Original strand, 23357025 - 23357142
Alignment:
Q  42 tttttcacggtgcacgctacccaatgtcacttttaccgtgattttatgaagctggaaattccagcttttgcctagaagtgcttttttgagctttccaccc 141  Q
    ||||||||||||||||||||||||| ||||||||||  |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||     
T  23357025 tttttcacggtgcacgctacccaatatcacttttactatgattttatgaagctgaaaattccagcttttgcctaaaagtgcttttttgagctttccaccg 23357124  T
Q  142 gtattccaaacacatact 159  Q
    ||||||||||||||||||    
T  23357125 gtattccaaacacatact 23357142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 42 - 159
Target Start/End: Original strand, 32891543 - 32891659
Alignment:
Q  42 tttttcacggtgcacgctacccaatgtcacttttaccgtgattttatgaagctggaaattccagcttttgcctagaagt-gcttttttgagctttccacc 140  Q
    |||||||||||||||| |  ||||||||  |||||||||||||||||||||||||||||||||||||||||||| | || | |||||| |||||| ||||    
T  32891543 tttttcacggtgcacgttttccaatgtc--ttttaccgtgattttatgaagctggaaattccagcttttgcctaaacgtgggtttttttagctttgcacc 32891640  T
Q  141 cgtattccaaacacatact 159  Q
     ||||||||||||||||||    
T  32891641 ggtattccaaacacatact 32891659  T

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Target: chr7 (Bit Score: 81; Significance: 7e-38; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 42 - 158
Target Start/End: Complemental strand, 23680524 - 23680408
Alignment:
Q  42 tttttcacggtgcacgctacccaatgtcacttttaccgtgattttatgaagctggaaattccagcttttgcctagaagtgcttttttgagctttccaccc 141  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||| |||||| || ||||||||| |||||||||     
T  23680524 ttttttacggtgcacgctacccaatgtcacttttatcgtgattttatgaagctggaaattctaacttttacctagacgtacttttttgaactttccacca 23680425  T
Q  142 gtattccaaacacatac 158  Q
    |||||||||||||||||    
T  23680424 gtattccaaacacatac 23680408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 506 - 553
Target Start/End: Complemental strand, 13410847 - 13410800
Alignment:
Q  506 ttatgcttatagaattcacaagtattctgaagcgcagtggtaaatggt 553  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  13410847 ttatgcttatagaattcacaagtattctgaagcgcagtggtaaatggt 13410800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 42 - 159
Target Start/End: Original strand, 2025770 - 2025888
Alignment:
Q  42 tttttcacggtgcacgctacccaatgtcacttttaccgtgattttatgaagctggaaattccagcttttgcctagaagtg-cttttttgagctttccacc 140  Q
    |||||||||||||||| ||| |||| |||||||||| ||||||||||||||||||||||||| |||||||| |||| |||  ||||||||||||||||||    
T  2025770 tttttcacggtgcacgttactcaatatcacttttactgtgattttatgaagctggaaattcctgcttttgcttagacgtgttttttttgagctttccacc 2025869  T
Q  141 cgtattccaaacacatact 159  Q
     ||||||||||||||||||    
T  2025870 ggtattccaaacacatact 2025888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 474 - 532
Target Start/End: Original strand, 45531790 - 45531848
Alignment:
Q  474 gttagacatatatcttataattgtacctcatgttatgcttatagaattcacaagtattc 532  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  45531790 gttagacatatatcttataattgtacctcatgtcatgcttatagaattcacaagtattc 45531848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 63 - 128
Target Start/End: Original strand, 39238019 - 39238084
Alignment:
Q  63 caatgtcacttttaccgtgattttatgaagctggaaattccagcttttgcctagaagtgctttttt 128  Q
    |||||| ||||||||||||| |||||||||||| |||| |||||||||||||||| |||| |||||    
T  39238019 caatgtgacttttaccgtgactttatgaagctgaaaataccagcttttgcctagacgtgcattttt 39238084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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