View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18673_high_4 (Length: 365)
Name: NF18673_high_4
Description: NF18673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18673_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 102 - 295
Target Start/End: Original strand, 41832445 - 41832638
Alignment:
| Q |
102 |
accaagctaagttttttgcttccacttcacataatctctcaacacgtgtagttgaagatatatagaagtccaacatttacaagggttaatcaataaaagc |
201 |
Q |
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| T |
41832445 |
accaagctaagttttttgcttccacttcacataatctctcaacacgtgtagttgaagatatatagaagtccaacatttacaagggttaatcaataaaagc |
41832544 |
T |
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| Q |
202 |
taggacggcacacactttaattaataatgaatattttcctgtttcttagtttaatatttttaacataagatcaacatgcttaagttttatcacc |
295 |
Q |
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| T |
41832545 |
taggacggcacacactttaattaataatgaatattttcctgtttcttagtttaatatttttaacataagatcaacatgcttaagttttatcacc |
41832638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 320 - 356
Target Start/End: Original strand, 41832663 - 41832699
Alignment:
| Q |
320 |
cagactcaaatatgtccattttaatcaatagtattat |
356 |
Q |
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| T |
41832663 |
cagactcaaatatgtccattttaatcaatagtattat |
41832699 |
T |
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