View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18673_high_6 (Length: 247)

Name: NF18673_high_6
Description: NF18673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18673_high_6
NF18673_high_6
[»] chr7 (5 HSPs)
chr7 (93-247)||(4866373-4866527)
chr7 (10-98)||(4873721-4873809)
chr7 (12-119)||(1751556-1751662)
chr7 (33-105)||(6531857-6531930)
chr7 (179-223)||(9046634-9046678)
[»] chr3 (2 HSPs)
chr3 (98-214)||(6461913-6462029)
chr3 (10-74)||(17576600-17576664)
[»] chr1 (4 HSPs)
chr1 (10-125)||(3362961-3363075)
chr1 (23-119)||(7839907-7840003)
chr1 (10-91)||(15421775-15421855)
chr1 (171-219)||(898463-898511)
[»] chr4 (5 HSPs)
chr4 (16-209)||(36709123-36709316)
chr4 (20-119)||(17465491-17465588)
chr4 (10-79)||(17295109-17295178)
chr4 (10-76)||(11376882-11376948)
chr4 (10-76)||(29367715-29367781)
[»] chr5 (2 HSPs)
chr5 (10-119)||(4237280-4237390)
chr5 (12-73)||(19222611-19222673)
[»] chr2 (3 HSPs)
chr2 (18-115)||(21515753-21515848)
chr2 (60-201)||(35406946-35407088)
chr2 (18-80)||(21511339-21511401)
[»] scaffold0148 (1 HSPs)
scaffold0148 (10-111)||(13164-13265)


Alignment Details
Target: chr7 (Bit Score: 147; Significance: 1e-77; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 93 - 247
Target Start/End: Complemental strand, 4866527 - 4866373
Alignment:
Q  93 aatagtttctttgtttaaattcagattttataaagaagccttaggattgttgttagatcttaacgataaatactaacaattccaagtctatatctctatc 192  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4866527 aatagtttctttgtttaaattcagattttataaagtagccttaggattgttgttagatcttaacgataaatactaacaattccaagtctatatctctatc 4866428  T
Q  193 ttatgttaaattcatttctaaacacaatattttcatgttttctttcagaatacat 247  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  4866427 ttatgttaaattcatttctaaacacaatattctcatgttttctttcagaatacat 4866373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 10 - 98
Target Start/End: Complemental strand, 4873809 - 4873721
Alignment:
Q  10 aatatcgttccacagagagttattgtaattacagatttcgttttcaatgatgattagctgaaaagattaagtattaaaagttcaatagt 98  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4873809 aatatcgttctacagagagttattgtaattacagatttcgttttcaatgatgattagctgaaaagattaagtattaaaagttcaatagt 4873721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 12 - 119
Target Start/End: Complemental strand, 1751662 - 1751556
Alignment:
Q  12 tatcgttccacagagagttattgtaattacagatttcgttttcaatgatgattagctgaaaagattaagtattaaaagttcaatagtttctttgtttaaa 111  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||| |||| ||| ||||  ||||||||||| ||| |||    
T  1751662 tatcgttccacagagagttattgtaattaccgatttcgttttcaatgttgattagcagaaaagatcaagt-ttagaagtcgaatagtttcttggttaaaa 1751564  T
Q  112 ttcagatt 119  Q
    ||||||||    
T  1751563 ttcagatt 1751556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 105
Target Start/End: Complemental strand, 6531930 - 6531857
Alignment:
Q  33 tgtaattacagatttcgttttcaatgatgattagctgaaaagattaagtattaa-aagttcaatagtttctttg 105  Q
    ||||||||| |||||  |||||||| |||||||||||||| |||| |  ||||| |||||||||||||||||||    
T  6531930 tgtaattaccgattttcttttcaattatgattagctgaaatgatttaagattaagaagttcaatagtttctttg 6531857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 9046678 - 9046634
Alignment:
Q  179 tctatatctctatcttatgttaaattcatttctaaacacaatatt 223  Q
    ||||||||||||| ||||||||||||| |||||||| ||||||||    
T  9046678 tctatatctctattttatgttaaattcgtttctaaagacaatatt 9046634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 98 - 214
Target Start/End: Complemental strand, 6462029 - 6461913
Alignment:
Q  98 tttctttgtttaaattcagattttataaagaagccttaggattgttgttagatcttaacgataaatactaacaattccaagtctatatctctatcttatg 197  Q
    |||||| ||||||||| | ||||||||||| ||||||| |||  | ||||||||| || |||||||||||||| |||||||||||||||||||||||||     
T  6462029 tttcttggtttaaattaaaattttataaaggagccttaagatattggttagatctgaatgataaatactaacagttccaagtctatatctctatcttata 6461930  T
Q  198 ttaaattcatttctaaa 214  Q
    |||||||||||||||||    
T  6461929 ttaaattcatttctaaa 6461913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 74
Target Start/End: Original strand, 17576600 - 17576664
Alignment:
Q  10 aatatcgttccacagagagttattgtaattacagatttcgttttcaatgatgattagctgaaaag 74  Q
    |||||||||||||| |||||| |||||||||  |||||  |||| |||  |||||||||||||||    
T  17576600 aatatcgttccacaaagagttgttgtaattattgattttcttttaaattgtgattagctgaaaag 17576664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 10 - 125
Target Start/End: Original strand, 3362961 - 3363075
Alignment:
Q  10 aatatcgttccacagagagttattgtaattacagatttcgttttcaatgatgattagctgaaaagattaagtattaaaagttcaatagtttctttgttta 109  Q
    ||||| ||| |||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||| |||  |  ||||| ||||| || |||||    
T  3362961 aatattgtttcacagagagttattgtaattaccgatttcgttttcaattgtgattagctgaaaagattaagcattcgagtttcaacagttt-ttggttta 3363059  T
Q  110 aattcagattttataa 125  Q
    |||||||||| |||||    
T  3363060 aattcagattatataa 3363075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 119
Target Start/End: Complemental strand, 7840003 - 7839907
Alignment:
Q  23 agagagttattgtaattacagatttcgttttcaatgatgattagctgaaaagatt-aagtattaaaagttcaatagtttctttgtttaaattcagatt 119  Q
    ||||||||||||||||||  |||||||||||||||| ||||||| ||||||| || |||| ||| ||||  ||||||||||||||  ||||| |||||    
T  7840003 agagagttattgtaattatcgatttcgttttcaatgttgattagttgaaaaggttcaagt-ttagaagtcgaatagtttctttgtcaaaatttagatt 7839907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 91
Target Start/End: Complemental strand, 15421855 - 15421775
Alignment:
Q  10 aatatcgttccacagagagttattgtaattacagatttcgttttcaatgatgattagctgaaaagattaagtattaaaagtt 91  Q
    ||||| ||||||||  |||||||||||||||  |||||  ||||||||  ||||||||||||||| ||| || |||||||||    
T  15421855 aatattgttccacatggagttattgtaattattgattttcttttcaattgtgattagctgaaaagtttaggt-ttaaaagtt 15421775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 898511 - 898463
Alignment:
Q  171 attccaagtctatatctctatcttatgttaaattcatttctaaacacaa 219  Q
    ||||||||||||| ||||||| ||| ||||||||| |||||||| ||||    
T  898511 attccaagtctatttctctattttaagttaaattcttttctaaagacaa 898463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 209
Target Start/End: Original strand, 36709123 - 36709316
Alignment:
Q  16 gttccacagagagttattgtaattacagatttcgttttcaatgatgattagctgaaaagattaagtattaaaagttcaatagtttctttgtttaaattca 115  Q
    |||| ||| ||||||||||||||||   ||||||||||||||| | |||| |||||||||||||||||| ||||||||| | ||| || |||||||||||    
T  36709123 gttctacaaagagttattgtaattatcaatttcgttttcaatgttaattatctgaaaagattaagtattcaaagttcaacaattt-ttggtttaaattca 36709221  T
Q  116 gattttataaagaagccttaggattgttgttagatcttaacgataaatact-aacaattccaagtctatatctctatcttatgttaaattcattt 209  Q
     ||  |||||| | | ||||||||||| || | ||||||| || ||| ||| |||||||||  |||||| ||  |||  ||||||||||||||||    
T  36709222 tataatataaaaaggtcttaggattgtggtcaaatcttaatgacaaaaactaaacaattccttgtctatttccttattctatgttaaattcattt 36709316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 119
Target Start/End: Complemental strand, 17465588 - 17465491
Alignment:
Q  20 cacagagagttattgtaattacagatttcgttttcaatgatgattagctgaaaagattaagtattaaaagttcaatagtttctttgtttaaattcagatt 119  Q
    ||||||||||||  |||||||| ||| | ||||||| |||||||||||||||||||||||| ||||| | ||||||   ||||| |||||| ||||||||    
T  17465588 cacagagagttaaagtaattaccgatcttgttttcagtgatgattagctgaaaagattaaggattaagatttcaat--gttcttagtttaatttcagatt 17465491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 17295109 - 17295178
Alignment:
Q  10 aatatcgttccacagagagttattgtaattacagatttcgttttcaatgatgattagctgaaaagattaa 79  Q
    ||||| ||||| || |||||||||||| |||| |||||| |||||||| |||||||||||||| ||||||    
T  17295109 aatattgttcctcaaagagttattgtacttaccgatttctttttcaattatgattagctgaaatgattaa 17295178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 76
Target Start/End: Original strand, 11376882 - 11376948
Alignment:
Q  10 aatatcgttccacagagagttattgtaattacagatttcgttttcaatgatgattagctgaaaagat 76  Q
    ||||||||||||| | ||||| |||||||||| |||||  |||  ||| ||||||||||||||||||    
T  11376882 aatatcgttccacggggagttgttgtaattaccgattttctttctaattatgattagctgaaaagat 11376948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 76
Target Start/End: Complemental strand, 29367781 - 29367715
Alignment:
Q  10 aatatcgttccacagagagttattgtaattacagatttcgttttcaatgatgattagctgaaaagat 76  Q
    |||||||||||||| |||||| ||||||||||  ||||  |||  ||| ||||||||||||||||||    
T  29367781 aatatcgttccacaaagagttgttgtaattaccaattttctttctaattatgattagctgaaaagat 29367715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 119
Target Start/End: Complemental strand, 4237390 - 4237280
Alignment:
Q  10 aatatcgttccacagagagttattgtaattacagatttcgttttcaatgatgattagctgaaaagattaagtattaaaagttcaa-tagtttctttgttt 108  Q
    ||||||||| ||| |||||||||||||||||| |||||||||| ||||| | ||||| |||||| ||||||||||  ||||||||  | |||||| |||     
T  4237390 aatatcgtttcacggagagttattgtaattaccgatttcgtttccaatgttaattagttgaaaatattaagtattcgaagttcaacaattttcttggtta 4237291  T
Q  109 aaattcagatt 119  Q
    |||||||||||    
T  4237290 aaattcagatt 4237280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 19222673 - 19222611
Alignment:
Q  12 tatcgttccacagagagttat-tgtaattacagatttcgttttcaatgatgattagctgaaaa 73  Q
    ||||| ||||||  ||||||| ||||||||| |||||| |||||||| |||||||||||||||    
T  19222673 tatcgatccacatggagttatatgtaattaccgatttccttttcaattatgattagctgaaaa 19222611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 21515753 - 21515848
Alignment:
Q  18 tccacagagagttattgtaattacagatttcgttttcaatgatgattagctgaaaagattaagtattaaaagttcaatagtttctttgtttaaattca 115  Q
    |||| |||||||||  |||||||| |||   |||||||||||||||||||||||||||||||| ||||| ||||||||   ||||| |||||||||||    
T  21515753 tccatagagagttaaagtaattactgatcatgttttcaatgatgattagctgaaaagattaaggattaagagttcaat--gttcttggtttaaattca 21515848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 60 - 201
Target Start/End: Complemental strand, 35407088 - 35406946
Alignment:
Q  60 tgattagctgaaaagattaagtattaaaagttcaatagtttctttgttt-aaattcagattttataaagaagccttaggattgttgttagatcttaacga 158  Q
    ||||||||||||||||| |||| ||| ||||||||| |||| || |||| |||||||||| ||||||||| | ||||||||||| ||   ||  ||| ||    
T  35407088 tgattagctgaaaagatcaagt-ttataagttcaatggtttgttggttttaaattcagatattataaagaggtcttaggattgtggtctaattgtaatga 35406990  T
Q  159 taaatact-aacaattccaagtctatatctctatcttatgttaa 201  Q
     ||||||| |||||||||   ||||||||||||| |||||||||    
T  35406989 caaatactaaacaattccctatctatatctctattttatgttaa 35406946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 21511339 - 21511401
Alignment:
Q  18 tccacagagagttattgtaattacagatttcgttttcaatgatgattagctgaaaagattaag 80  Q
    |||||| |||||||  |||||||| ||| | ||||||||||||| ||||||||||||||||||    
T  21511339 tccacatagagttaaagtaattaccgatcttgttttcaatgatgcttagctgaaaagattaag 21511401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 111
Target Start/End: Complemental strand, 13265 - 13164
Alignment:
Q  10 aatatcgttccacagagagttattgtaattacagatttcgttttcaatgatgattagctgaaaagattaagtattaaaagttcaatagtttctttgttta 109  Q
    ||||||||||| ||||||||| || | ||||| |||||| || | | | |||||||| ||||| |||||||  | | ||||||||||||||||||| |||    
T  13265 aatatcgttcctcagagagttgttttgattaccgatttctttcttagttatgattagttgaaatgattaaggttcagaagttcaatagtttctttgatta 13166  T
Q  110 aa 111  Q
    ||    
T  13165 aa 13164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University