View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18673_high_7 (Length: 241)
Name: NF18673_high_7
Description: NF18673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18673_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 4866169 - 4865949
Alignment:
| Q |
1 |
cacatgacgggttcctctgaatacttgcacaatttacattcttacgatggtaatcagaaaattcaaattgctgatggtaataccctttctatcactactg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4866169 |
cacatgacgggttcctctgaatacttgcacaatttacattcttacgatggtaatcagaaaattcaaattgctgatggtaataccctttctatcactactc |
4866070 |
T |
|
| Q |
101 |
ttggtgacataaactctggttttcgagatgttcttgtatcacctggacttgcttccaacttattgttcaaaacgtccaaaaatgagcctatgaagggacg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4866069 |
ttggtgacataaactctggttttcgagatgttcttgtatcacctggacttgcttccaacttattgttcaaaacgtccaaaaatgagcctatgaagggacg |
4865970 |
T |
|
| Q |
201 |
cacgatcgtgcaggtaaggcg |
221 |
Q |
| |
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||||||||||| ||||||||| |
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| T |
4865969 |
cacgatcgtgcgggtaaggcg |
4865949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 35937117 - 35936952
Alignment:
| Q |
1 |
cacatgacgggttcctctgaatacttgcacaatttacattcttacgatggtaatcagaaaattcaaattgctgatggtaataccctttctatcactactg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| || || |||||| || |
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| T |
35937117 |
cacatgacgggttcctctgaatacttgcacaatttacattcttatcatggtaatcaacaaattcaaattgctgatggtaataaactctccatcactgatg |
35937018 |
T |
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| Q |
101 |
ttggtgacataaactctggttttcgagatgttcttgtatcacctggacttgcttccaacttattgt |
166 |
Q |
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|||||||||| ||||| | ||||| ||| || ||||||||||| ||||||||||| || ||||||| |
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| T |
35937017 |
ttggtgacatcaactccgattttcaagacgtgcttgtatcacccggacttgcttctaatttattgt |
35936952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 17605839 - 17605682
Alignment:
| Q |
1 |
cacatgacgggttcctctgaatacttgcacaatttacattcttacgatggtaatcagaaaattcaaattgctgatggtaataccctttctatcactactg |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||| |||||||||||| || |
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| T |
17605839 |
cacatgacgggttccttagaatacttgcacaatttacattcttatgatggtaataagaaaattcaaattgccgatggtaatactctttctatcactgatg |
17605740 |
T |
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| Q |
101 |
ttggtgacataaactctggttttcgagatgttcttgtatcacctggacttgcttccaa |
158 |
Q |
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|||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||| |
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| T |
17605739 |
ttggtgacataaactctgattttcgggatgtgcttgtatcacctggacttgcttccaa |
17605682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 94; Significance: 5e-46; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 26626272 - 26626107
Alignment:
| Q |
1 |
cacatgacgggttcctctgaatacttgcacaatttacattcttacgatggtaatcagaaaattcaaattgctgatggtaataccctttctatcactactg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| || || |||||| || |
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| T |
26626272 |
cacatgacgggttcctctgaatacttgcacaatttacattcttatcatggtaatcaacaaattcaaattgctgatggtaataaactctccatcactgatg |
26626173 |
T |
|
| Q |
101 |
ttggtgacataaactctggttttcgagatgttcttgtatcacctggacttgcttccaacttattgt |
166 |
Q |
| |
|
|||||||||| ||||||| ||||| ||| || ||||||||||| ||||||||||| || ||||||| |
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| T |
26626172 |
ttggtgacatcaactctgattttcaagacgtgcttgtatcacccggacttgcttctaatttattgt |
26626107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 49117848 - 49118013
Alignment:
| Q |
1 |
cacatgacgggttcctctgaatacttgcacaatttacattcttacgatggtaatcagaaaattcaaattgctgatggtaataccctttctatcactactg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| || || |||||| || |
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| T |
49117848 |
cacatgacgggttcctctgaatacttgcacaatttacattcttatcatggtaatcaacaaattcaaattgctgatggtaataaactctccatcactgatg |
49117947 |
T |
|
| Q |
101 |
ttggtgacataaactctggttttcgagatgttcttgtatcacctggacttgcttccaacttattgt |
166 |
Q |
| |
|
|||||||||| ||||||| ||||| ||| || ||||||||||| ||||||||||| || ||||||| |
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| T |
49117948 |
ttggtgacatcaactctgattttcaagacgtgcttgtatcacccggacttgcttctaatttattgt |
49118013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 26635683 - 26635518
Alignment:
| Q |
1 |
cacatgacgggttcctctgaatacttgcacaatttacattcttacgatggtaatcagaaaattcaaattgctgatggtaataccctttctatcactactg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| || || |||||| || |
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| T |
26635683 |
cacatgacgggttcctctgaatacttgcacaatttacattcttatcatggtaatcaacaaattcaaattgctgatggtaataaactctccatcactgatg |
26635584 |
T |
|
| Q |
101 |
ttggtgacataaactctggttttcgagatgttcttgtatcacctggacttgcttccaacttattgt |
166 |
Q |
| |
|
|||||||||| ||||||| ||||| ||| || |||||||||| ||||||||||| || ||||||| |
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| T |
26635583 |
ttggtgacatcaactctgattttcaagacgtgtttgtatcacccggacttgcttctaatttattgt |
26635518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 15821138 - 15821052
Alignment:
| Q |
1 |
cacatgacgggttcctctgaatacttgcacaatttacattcttacgatggtaatcagaaaattcaaattgctgatggtaatacccttt |
88 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| || |||||||||||||| |
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| T |
15821138 |
cacatgacgggttcctctgaatacttgcacaatt-acattcttattatggtaatcagaaaattcaaattgttgctggtaatacccttt |
15821052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 21691794 - 21691959
Alignment:
| Q |
1 |
cacatgacgggttcctctgaatacttgcacaatttacattcttacgatggtaatcagaaaattcaaattgctgatggtaataccctttctatcactactg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||| |||| ||| || |||||| || |
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| T |
21691794 |
cacatgacgggttcctctgaatacttgcacaatttagcttcttatcatggtaatcaacaaattcaaattgctgatggaaataacctctccatcactgatg |
21691893 |
T |
|
| Q |
101 |
ttggtgacataaactctggttttcgagatgttcttgtatcacctggacttgcttccaacttattgt |
166 |
Q |
| |
|
|||||||||| ||||| | |||||| | || ||||||||||| ||||||||||| || ||||||| |
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| T |
21691894 |
ttggtgacatcaactccgattttcgtaacgtgcttgtatcacccggacttgcttctaatttattgt |
21691959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 57 - 165
Target Start/End: Original strand, 17039323 - 17039435
Alignment:
| Q |
57 |
gaaaattcaaattgctgatggtaataccctttctatc----actactgttggtgacataaactctggttttcgagatgttcttgtatcacctggacttgc |
152 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |||| ||||||| |||||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
17039323 |
gaaaattcaaattgatgatggtaataccctttctatcgatcactaatgttggtaacataaactctgattttcgagatgtgcttgtatcacctggacttgc |
17039422 |
T |
|
| Q |
153 |
ttccaacttattg |
165 |
Q |
| |
|
||||||| ||||| |
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| T |
17039423 |
ttccaacctattg |
17039435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 115
Target Start/End: Complemental strand, 27985462 - 27985394
Alignment:
| Q |
47 |
atggtaatcagaaaattcaaattgctgatggtaataccctttctatcactactgttggtgacataaact |
115 |
Q |
| |
|
|||||| ||||||||||||||||| ||| |||||||| |||| |||||||| |||||||| |||||||| |
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| T |
27985462 |
atggtactcagaaaattcaaattgttgacggtaatactctttgtatcactaatgttggtgtcataaact |
27985394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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