View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18673_high_8 (Length: 239)
Name: NF18673_high_8
Description: NF18673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18673_high_8 |
 | |
|
| [»] chr6 (2 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 16 - 239
Target Start/End: Complemental strand, 15084256 - 15084033
Alignment:
| Q |
16 |
aaaccatgtgcccaaaaagtaacactatcattccaagtcaaactcaaattaccaatctttgcaagactaaaactataatcaccagatttcaataccttac |
115 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15084256 |
aaaccatgtgtccaaaaagttacactatcattccaaatcaaactcaaattaccaatctttgcaagactaaaactataatcaccagatttcaataccttac |
15084157 |
T |
|
| Q |
116 |
caacactaaaatttgtagatggcaaaagggtatctgtaagatgatcaaagcttgaccaaacttcctttgtcccattgaaaatgaccaatttgccactatc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
15084156 |
caacactaaaatttgtagatggcaaaagggtatctgtaagatgatcaaagcttgaccaaacttcctttgtcccattcaaaatgaccaatttgccactatc |
15084057 |
T |
|
| Q |
216 |
ttcaatttcaactgatgtaccacc |
239 |
Q |
| |
|
|| ||||| ||||||||||||||| |
|
|
| T |
15084056 |
ttgaattttaactgatgtaccacc |
15084033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 15088079 - 15087875
Alignment:
| Q |
16 |
aaaccatgtgcccaaaaagtaacactatcattccaagtcaaactcaaattaccaatctttgcaagactaaaactataatcaccagatttcaataccttac |
115 |
Q |
| |
|
|||||||| | ||||||||| | ||||||||||||| ||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||| | ||||| |
|
|
| T |
15088079 |
aaaccatgagtccaaaaagttatactatcattccaaatcaaattcaaattaccattctttccaagactaaaactataatcaccagatttcaaaatcttac |
15087980 |
T |
|
| Q |
116 |
caacactaaaatttgtagatggcaaaagggtatctgtaagatgatcaaagcttgaccaaacttcctttgtcccattgaaaatgaccaatttgccactatc |
215 |
Q |
| |
|
||||| ||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||| || || ||||| ||||||| ||||| || |
|
|
| T |
15087979 |
caacagtaaaattctgagaaggcaaaagggtatctgtaagatgatcaaagctcgaccaaacttcctttgttccgttcaaaatcgccaatttaccactgtc |
15087880 |
T |
|
| Q |
216 |
ttcaa |
220 |
Q |
| |
|
||||| |
|
|
| T |
15087879 |
ttcaa |
15087875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University