View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18673_low_2 (Length: 474)
Name: NF18673_low_2
Description: NF18673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18673_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 12 - 461
Target Start/End: Original strand, 24134982 - 24135424
Alignment:
| Q |
12 |
aatatttgaatttttgaactaattactaataagccttgggaagtgattcctcctctctttggagaagtggaaaactactcgtcccaccaagaagaggtga |
111 |
Q |
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| T |
24134982 |
aatatctgaatttttgaactaattactattaagccttgggaagtgattcct---ctctttggagaagtggaaaactactcgtcccaccaaggagaggtga |
24135078 |
T |
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| Q |
112 |
aaaatcactggccccaccaataaagtcatgggatgctctattatgagacgaacactgatgaaaagaaaatcgattcaataattttcaaacaaattgtcgg |
211 |
Q |
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| T |
24135079 |
aaaatcactggccccaccaataaagtcatgggatgctctattatgagacgaacgctgatgaaaagaaaatcgattcaataattttcaaacaaattgtcgg |
24135178 |
T |
|
| Q |
212 |
atcggtaaggtatctatgcaataacaagcctgacataagttttgtagttagcttaattagcagattcatgtatgtttctagaaaatctcacatgaacgtt |
311 |
Q |
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||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
24135179 |
atcagcaaggtatctatgcaataacaagcctgacataagttttgtagttagcttaattagaa----catgtatgtttctagaaaatctcacatgaacgtt |
24135274 |
T |
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| Q |
312 |
gcaaggaggatgctcaggtatctaaataacaccatatgttattgtatcatgttcgtcgatcctcagaccaagaagaagcattcatcacatgcttctcaga |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24135275 |
gcaaggaggatgctcaggtatctaaataacaccatatgttattgtatcatgttcatcgatcctcagaccaagaagaagcattcatcacatgcttctcaga |
24135374 |
T |
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| Q |
412 |
tgtgaactggtgtggcgacaaggttgataaaagaagcactgcaggttatt |
461 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24135375 |
cgtggactggtgtggcgacaaggttgataaaagaagcactgcaggttatt |
24135424 |
T |
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