View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18673_low_3 (Length: 395)
Name: NF18673_low_3
Description: NF18673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18673_low_3 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 120 - 395
Target Start/End: Complemental strand, 26596784 - 26596510
Alignment:
| Q |
120 |
cttgaagttggtttaggtggagaatttgcaggaggatagattgtaattatttcttgtatgtgtcgctattgattcatcgatgtgattgtttagaatttct |
219 |
Q |
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| T |
26596784 |
cttgaagttggtttaggtggagaatttgcaggaggatagattgtaattgtttcttgtatgtgtcgctattgattcatcgatgtgattgtttagaatttct |
26596685 |
T |
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| Q |
220 |
cttacactccttttattaaaattattttgcttatataaaaacaaaataagataatttttagttcttgacaaaaataaattgagacattttaatctacata |
319 |
Q |
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| T |
26596684 |
cttacactccttttattaaaattattttgcttatataaaaacaaaataagataatttttagttcttgacaaaaataaattgagacattttaatctacata |
26596585 |
T |
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| Q |
320 |
aaaatgtatttgttgagttgaggtgtgtgtccactaggactgattttacaaaatggattaattctccaatgatttc |
395 |
Q |
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| T |
26596584 |
aaaatgtatttgttgagttgaggtgtgtgtccactaggattgattttac-aaatggattaattctccaatgatttc |
26596510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 26596919 - 26596812
Alignment:
| Q |
8 |
aatatgggagacaaaatctcattctcatccctaagaaaatatcttgaatttagcatggcttggcacaaaataaatgtgtctttgtggggtaaggtttcta |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26596919 |
aatatgggagacaaaatctcattctcatccctaagaaaatatcttgaatttagcttggcttggcacaaaataaatgtgtctttgtggggtaaggtttcta |
26596820 |
T |
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| Q |
108 |
atactaat |
115 |
Q |
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| T |
26596819 |
atactaat |
26596812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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